HsaEX0073083 @ hg19
Exon Skipping
Gene
ENSG00000163848 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:12933]
Coordinates
chr3:124953055-125007072:-
Coord C1 exon
chr3:125006947-125007072
Coord A exon
chr3:124997968-124998091
Coord C2 exon
chr3:124953055-124953173
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTTTTGAACTAGATC
3' ss Score
9.24
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATAAGCGTAAAGCAGGAAATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAATCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGTTCTCCCGCAAAA
Seq A exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG
Seq C2 exon
GTGAAAAACCATTTCGCTGTGATGAATGTGGTATGAGATTCATACAAAAATATCATATGGAAAGGCATAAGAGAACTCATAGTGGAGAAAAACCTTACCAGTGTGAATACTGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163848_MULTIEX1-7/9=6-9
Average complexity
C2
Mappability confidence:
75%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.190 C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
PF127602=Zn_Tnp_IS1595=PU(70.5=73.8),PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTACTGATGTATCTGAGCAACT
R:
AACAGTATTCACACTGGTAAGGT
Band lengths:
219-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)