BtaEX6001442 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040031 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr1:70335886-70345887:-
Coord C1 exon
chr1:70345762-70345887
Coord A exon
chr1:70337189-70337312
Coord C2 exon
chr1:70335886-70335969
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTAAACCAGATC
3' ss Score
8.47
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATAAGTGTAAAGCAGGAAATTACTTTCACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAATCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAACGGAAACAGCGTTCTCCTGCAAAA
Seq A exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG
Seq C2 exon
GTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTACAGAGACATGAGAAGATTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040031-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTAAAGCAGGAAATTACTTTCAC
R:
TGAATCTTCTCATGTCTCTGTAGCA
Band lengths:
202-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]