BtaEX6001443 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040031 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr1:70294306-70337312:-
Coord C1 exon
chr1:70337189-70337312
Coord A exon
chr1:70335886-70335969
Coord C2 exon
chr1:70294306-70294424
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGATGTGAAATTATTTTAAGGTG
3' ss Score
4.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG
Seq A exon
GTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTACAGAGACATGAGAAGATTCATACTG
Seq C2 exon
GTGAAAAACCATTTCGCTGTGATGAATGTGGTATGAGATTCATTCAAAAATACCATATGGAAAGGCATAAGAGAACTCATAGTGGAGAAAAACCTTACCAGTGTGAATACTGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040031-'5-10,'5-6,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTGTGAGCACTGCAATGC
R:
TCACACTGGTAAGGTTTTTCTCCA
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]