GgaEX0018106 @ galGal4
Exon Skipping
Gene
ENSGALG00000012049 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr7:27545166-27556353:-
Coord C1 exon
chr7:27556008-27556353
Coord A exon
chr7:27550738-27550821
Coord C2 exon
chr7:27545166-27545284
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTGGAATTATATTGTTCAAGGTG
3' ss Score
2.88
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTATTGCACTTAAGAATGAACATTGAAGACAAGCTGGGAGGATTATTTCTTAAATGTGGTGGCATAGACCAGATGCAGTCATCCAGGGCTATGGTAGGGATGGGTGCAGTATCTGACCAGTCCGGAGTGTCGGGAGAACGGCAAGAGGCGGTGCTTCAAGATCGGACTATGGCGCACCAGGAAATTCTTGCACCAGACGAAGTGTTACAGGAAAGTGAACTTCGACAGCAAGAGATGATTTCACATGATGAACTCATGGTCCATGAGGAGACGGTAAAAAATGATGATGACATGGATACGCAAGATAGACTTCCTCAAGGGCTGCAGTATGCTGTTAATGTCCCT
Seq A exon
GTGAAAAACCATTTCAGTGCAGTCAGTGCGACATGCGTTTCATACAGAAGTACCTGCTACAGAGGCATGAGAAGATTCATACTG
Seq C2 exon
GTGAGAAGCCATTTCGTTGTGATGAATGTGGTATGAGGTTTATTCAGAAGTATCACATGGAAAGGCACAAAAGAACTCACAGTGGAGAGAAGCCTTACCAGTGCGAGTATTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.696 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Skipping Isoform:
ENSGALT00000019681fB14001
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCATGAGGAGACGGTAA
R:
GGCTTCTCTCCACTGTGAGTT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]