GgaINT0047344 @ galGal4
Intron Retention
Gene
ENSGALG00000012049 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr7:27554641-27556353:-
Coord C1 exon
chr7:27556008-27556353
Coord A exon
chr7:27554767-27556007
Coord C2 exon
chr7:27554641-27554766
Length
1241 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
3' ss Seq
GGCACTTGGTATCTTAACAGATC
3' ss Score
6.36
Exon sequences
Seq C1 exon
GTTATTGCACTTAAGAATGAACATTGAAGACAAGCTGGGAGGATTATTTCTTAAATGTGGTGGCATAGACCAGATGCAGTCATCCAGGGCTATGGTAGGGATGGGTGCAGTATCTGACCAGTCCGGAGTGTCGGGAGAACGGCAAGAGGCGGTGCTTCAAGATCGGACTATGGCGCACCAGGAAATTCTTGCACCAGACGAAGTGTTACAGGAAAGTGAACTTCGACAGCAAGAGATGATTTCACATGATGAACTCATGGTCCATGAGGAGACGGTAAAAAATGATGATGACATGGATACGCAAGATAGACTTCCTCAAGGGCTGCAGTATGCTGTTAATGTCCCT
Seq A exon
GTAAGCAATTTATTTGTGAAATATGGGAGAACTTACTAGGGAACTTGATCTGGTAGTCTTATCATACTCTGGCAAGAATCTATTAATTGCTTGTTTGGATTTTGATTATCAAAATATTTATGAATAGATGCTATTTACAAAAATGTCGTTTGCCTCTGTCTGTGGACAGTTTTTTTTCCAATTAAGTATAATCTTTGAGTATCTGTTTTATAAATATTTTATAATCAGGCTGTTACCATAGAATTAGCGAGTTAAAATGTGCTCTTCTTAATATATTTAATGTTCCAGGGTAACTATAGACCAGAATAAATAGCATTAAGGAAAGGTGCATACTGTTTATGCTGTTCATAGTACTGTTTAGTTTCTTTTGACATAGGAAGCATTTTCTTATATGTTTTCCAAGTATGTGGACGCTTAGCAATTGCATTCACACTGCAGGTTGGACTGTGACACTTCATACATGACCATAAATATGCCCCTCCTCGATATCTAACAGAAGCCGTACCTCATCTTTCCCAGTGCGAATACAGATGACTTCCTTTTGAAAGCAGAGCGTCTGTCTGTAAAGCAGCACATCATCACTGTTACCCGTCAAACATAAAGGATAATTGCAAGGACCTTAAAAGTAGATAGCCTTATATACGAAGAATAATCCTTAGAAAGGTAGCGTTGTTAAAACACTACTCTGTTAGCTGGAGATCAGGCAGTTCAGCTGTTAGAAAAATGTAAGAGTATCTTGCTCTTCATTAAAGTTTACCTCAAGAAATACTTTTTGGAAAAGACAAAACAAAACAAAAAACACCACCAAACCCTTCGTTAGCAATATTTTTGTTTTCTTTAAAAATATTTCTGTCTTAAATATATAATAAACTATTCAGTTAAATCTTGCATTGACAGTACGCAGACTAAAGTAAAATAGGTGTGAAAAGCTGAATGGTTTTACAGATGGAAGTGATTTTAATATAAAGACTGATCTCAAAATCACCACAGATCAGAAGGAAAAAAGACTTTGGGAGATGAATGAAAGGATACATCAAAATGTCACTGTGAAAATTAACTATGCCCTTTTTACTTAGATATTTATTATTCCTTTCACTTAAATTTCTGAAAGAATGAAGCCACCAGATAACTCCCTTTAGAAAAAGGTTTTCTGTTTCAGCAGTTTGTCATCTTCTAAAATTGAAAAATTGCTTTTCTGTAGTGAGAACCTTACCTGAAACTGGCACTTGGTATCTTAACAG
Seq C2 exon
ATCAGTGTAAAGCAAGAAATTACCTTTACTGATGCATCTGAACAACAGAAACGAGACAAAAAACAAATACGAGAGCCAGTAGATTTGCAGAAAAAGAAGAAAAGAAAACAGCGTTCACCAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049:ENSGALT00000019681:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=NA C2=0.821
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGACCAGTCCGGAGTGTC
R:
TGCTGGTGAACGCTGTTTTCT
Band lengths:
358-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]