DreINT0181178 @ danRer10
Intron Retention
Gene
ENSDARG00000055106 | znf148
Description
zinc finger protein 148 [Source:ZFIN;Acc:ZDB-GENE-030131-8769]
Coordinates
chr9:38820167-38823881:+
Coord C1 exon
chr9:38820167-38820614
Coord A exon
chr9:38820615-38823755
Coord C2 exon
chr9:38823756-38823881
Length
3141 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GTTGTTTTTTTGTTTGTTAGGTA
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTTGACGTTGGAAAGGTGCCGTGTTGACTGCTGATTGGAATCCCTATGTTGGTTCTGTAACTTCAGCACAACTGCTCAGCGTTCAGCGATGAACATTGATGACAAGCTGGAGGGCATGCTTTTGAAATATAGCCCTGTGGGGCTTCAACACCCTTCCAGAGGTTTGGGACCCTCGAGGGTGGATGGAAGAGGAAGAAGAGGCAGTTTGGATATGACTCTTGGGGAGCGCAGCTTGGCGAATCATCCACTTTTGGCAGAGGATGATGATGACGAGGATGAGGAGGAGGATGATGACGATGACCTGGCAGGTGAAGGCCTGACCTCACATGACCTGATATCTCAGGATGACCTGATGGTGCATGAGGAGACGGTCAAAAATGATGGACAGGATGAAGCAGCTTTCTCACATCGAATCTCCAATAAATTACACTATACACTCAGTATGCCG
Seq A exon
GTAAGTGTGCAGTTGATCAGTCACTTGTACTTGTGCAGCTTTGTCAGTCCACGTAAAAAAAGTAAATGTCGGGTAAAATAAGTGTGCATTTATTTTCAGTAAATAATTTATTGTAAACAAATTGAATTTTATTGTTAAACTTTACAAAATGTATTTAAGTTTTATTGTAGTATTTGTGGTGTTTTGGAGATACTCATGGTTCAAGATAGGGTTGGGTCGATAGATAATGCCATCGTCCGTCGCCGATAGAGACGTCACAATGCTGAGCCAACATTGTGATCCTCCGCCCCGCCCCTGTCGCAGCAGTAAGTTGTTGGCGAAAAATACACACTTTGGCCCCGTTTACACTAATAAGTCTTTATTTTAAAATGACATTTTAGAACGCAAATGATCCACGTCCACATTGTACTGTTGAAAATGCACATCACGTGACCACACACACAAACACAGTGGCTGTTTCTCAATTCCAAGAACACAGAGAACGGACTTGTGTTCTTGTGGAGACCGGTCTTGCCAGGTATCCTCAGAAGAACGAACTCAGGAGACCGCAAGGACAGAAAGCGGGTCCTTTGAGAATTGAGATGCTGCGTTCTTTCTGATGGTCACATGACTTTCACGTGTTTTAAGCGGTAAATTATTTAAACATTACAGCACTCATACAACGATTTATTGTTTTTCCCCTTTTCAAAATATATACTGTGCATAAAACATTATAAATCTATGTTGCACAATATAAATAAAACAGATTTTAATACGAATTTCAGCAAACAAACACCCTTAATGTGTTTATTCCTTTATTAAGATGTCCATGGTAATGTTTACTTTCACTGTTTCATTTAGGGAAACTCCTGAGGTAAATAAGTCATATCTCTGAACTTTAATAATAAATCTAAATAAAATGCTGCGCTTCCCACCTCCAGTCGCAATGACTTCTGGGACTTCCAGAGCGAGTTCGGTGCTCAAGTCTGCATCGTTGCGTCCTAGATATCAAGATCATAAGTTTCACGCGTCCTCCGTACTTGCGGTCTTAAAGGGTCACGAAACACCAAAACACATTTTTTGAGCTGTTGACAGTCGTATATGTGTCCCACACTGCTAAAAACACTATTAGGACACCTATATTTCACTAAAAAGTGTAAATTGGTTGTTTTTGCGTTATTTCAAGCAAATTCGTACTTCCGGTTTGAAACAAATTTTTGAAGCTGCGTCACGGTCATGACATAATAGCGTTGTATTCCAGCGTGCAGACTGGACGTCTGTACCAGAGTGTCTTATTACGTCTTACAGTGTGATGCATTAATGCATGAGTAAGGCTTGGTTCAAACCAATCAGCTCGCTCTATTGTGCAACTTCATTAATATTCATTAGTGTCACCGTGTTTACACGACAAAGACGCCACGTTGTGTTGGCAAAACAAGCGTGAAGTGTTGCTTTTATAGTTTGCTGCCGTTAAGTTTTGTTTTCATTTTCTCTCTGTGGGAGCTCAACTGGAGTCACGTGTGGATTAACAGTGTACGCGACGCTCGACAACAATAACTTACATGTCTAAGGAGGATTATTGTTTACCTGAGAGCTGTTCTCATCTGCAAACGCTGAGATCCAGATTCCCTTGTAGTATTCTCTTCATAAAGACGCGGCTCTAGTTGCTGGTGATTGTCCTGTCTCTACAGATTTGGTAAGTGAGCGACCAGTGCTCTTTGTTTATTCAGTTTGTTCGTATCGAACTAAGTTAACTATTGCACCGAGTGTAAACATGTTAGCACCACACTCATACTCACCTGCTGAGAGCATCTAAGTTTCCGGGAAATGCAGAGGGTTTTTTCTATCATTCGCCGTGCGGTATTAAACATTGCATGAAAAATACACGCTTAGAGCAGTTCCTCGAATCAAATATCTTGTTTGTCGCGAGAGGCATGAATGAATTCCCTGAATCAAAGAGCCAAACTGCAGTTAAAGTCCAACATTTAATAATTTGGCAAATAATTCGCCTACAAATGTCCATGTAGGTTAAACACCATTACTTTCTCCTGTGTGTGTATTTTGACTCTGAAACTCGCGCATGCCCAAATAGACACTACCACACCATCCCACTTTAGTTCCTCCGACACTCCCCCCTAAACAGAGCTGGACACGCCTACTTTTCTGACTTTTTCCAACGTAGAGGTGTGAAAACACCCTGCTGAAACGAGGGGGTTTCATGGCCCTTTAAGTATTGGAACTGAGCTTGGGCAGCTGATGATGACGTTGCACGAGAACACGAGGACGCAAGACCGCTGAAGAACGCATATTGAGAAACAGCCACTCTGTTGTGCTGCTGCATATACGCGAGTCTGACTGAGCTCCAGCAGTCAGCTAGCACGTCGGACAGTTTATCAAGGATGTATCGCTGGATCGCTTCTCACTATTGTTATTAAAAGTGATATTTAATTAATCTTGTCATTAACGTCTTTTAAACCTATCAGGTATTGTGTCACTGTCAATACACTGCTTCAAACTATCGGTTTCACGCCTGTACTTAGTCATTTTAGTAAAAACCTCAGATACTGTTGGCTTGTTCCTGTTGGTTGTGCACCTTTTTACCAACCAAGTTTGTCAACGCCTATTTAATGACACAGATCACTCTGCCTATTCATGCCAGAGTCCCGCGGAAACAGTTATTGACAGGTGGCAATTGGTGTGTAACTTATTTTTATTTATTTATGATTTGGTTATGGGTAAAACAAAGACCATTTGTTCAGGTAGTTGACCAAGAGGTCAGGTAGTTGAAACGGCAGGCTACAAATAATTAATTCATCGTTCATCGCGATGTTTCACATTAGACATCGCCCAACCCTAGTTCAAGAATGAGTACACCCTTTTATGCACATTAAGTGAGAAACGGATTAAAATCTTCATTTTAAAAAAAAAGTACTTATTTATGATGTATCCAAAATCCTCAAACCTTTAGTGCATAATTTAAAATATTGATTATCGTTGTTTCCCAGTGACAGGTTGCAGCTGGAAGGGCATCCACTTTTTAAAGCATATGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGTGACCCCCTGATGAATAACGGGACTAAGCCGAACGAAAATGAATGACTGAATGATTTTTGTTGTTGTTTTTTTGTTTGTTAG
Seq C2 exon
GTAAATATAAAGCAGGAGATGAAAGTGCCAGACTCATTGATTCTAAATAAAAAGGAGAAGAAACCAGGGAGGGACCCATCTGACTGTCACAAAAAGAAGAAGAGAAAGCAGCGCTCGCCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055106:ENSDART00000077389:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.881
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]