GgaEX0018104 @ galGal4
Exon Skipping
Gene
ENSGALG00000012049 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr7:27551489-27556353:-
Coord C1 exon
chr7:27556008-27556353
Coord A exon
chr7:27554641-27554766
Coord C2 exon
chr7:27551489-27551612
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCACTTGGTATCTTAACAGATC
3' ss Score
6.36
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTTATTGCACTTAAGAATGAACATTGAAGACAAGCTGGGAGGATTATTTCTTAAATGTGGTGGCATAGACCAGATGCAGTCATCCAGGGCTATGGTAGGGATGGGTGCAGTATCTGACCAGTCCGGAGTGTCGGGAGAACGGCAAGAGGCGGTGCTTCAAGATCGGACTATGGCGCACCAGGAAATTCTTGCACCAGACGAAGTGTTACAGGAAAGTGAACTTCGACAGCAAGAGATGATTTCACATGATGAACTCATGGTCCATGAGGAGACGGTAAAAAATGATGATGACATGGATACGCAAGATAGACTTCCTCAAGGGCTGCAGTATGCTGTTAATGTCCCT
Seq A exon
ATCAGTGTAAAGCAAGAAATTACCTTTACTGATGCATCTGAACAACAGAAACGAGACAAAAAACAAATACGAGAGCCAGTAGATTTGCAGAAAAAGAAGAAAAGAAAACAGCGTTCACCAGCAAAA
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTCTGAAAACCCACAAATCTCATGTTTGTGAGCATTGCAATGCTGCCTTTAGAACCAACTACCATTTACAGAGACATGTCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049_MULTIEX1-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.696 A=0.821 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Skipping Isoform:
ENSGALT00000019681fB14001
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGGCGGTGCTTCAAGAT
R:
TGTGGGTTTTCAGACCAAGTGA
Band lengths:
250-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]