RnoEX0101064 @ rn6
Exon Skipping
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70540956-70570814:-
Coord C1 exon
chr11:70570466-70570814
Coord A exon
chr11:70550852-70550977
Coord C2 exon
chr11:70540956-70541079
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTTCTTTTTAAACAGATA
3' ss Score
9.5
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCAGTTATACTTAAGCATGAACATTGACGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCAGGGCAATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCCGCCGTGTCCGGAGAACTTCAGGAGTCAGTACTTCAAGATCGAAGTTTGCCTCACCAGGAGATCCTTGCTGCTGACGAAGTGTTACAAGAGAGTGAAATGAGACAACAGGATATGATATCCCATGATGAACTCATGGTCCACGAGGAGACAGTGAAAAATGACGAAGAGCAGACGGACACCCACGAGCGGCTTCCTCAAGGACTGCAGTATGCGCTTAATGTCCCC
Seq A exon
ATAAGTGTAAAGCAGGAGATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTGAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAA
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTCTGTGAGCACTGCAACGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789_MULTIEX1-2/4=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.595 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTCACCAGGAGATCCTT
R:
TTGCAGTGCTCACAGACGTG
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]