MmuEX0053047 @ mm10
Exon Skipping
Gene
ENSMUSG00000022811 | Zfp148
Description
zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
Coordinates
chr16:33434626-33466978:+
Coord C1 exon
chr16:33434626-33434974
Coord A exon
chr16:33456876-33457001
Coord C2 exon
chr16:33466855-33466978
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTTTTTTTTAAACAGATA
3' ss Score
9.42
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCAGTTATACTTAAGCATGAACATTGACGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCAGGGCAATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCCGCCGTGTCTGGAGAACTGCAGGAGTCAGTACTTCAAGATCGAAGTTTGCCTCACCAGGAGATCCTTGCTGCAGACGAAGTGTTACAAGAGAGTGAAATGAGACAACAGGATATGATATCCCATGATGAACTCATGGTCCACGAGGAGACAGTGAAAAATGACGAAGAGCAGATGGACACCCACGAGCGGCTTCCCCAAGGACTGCAGTATGCACTCAATGTCCCT
Seq A exon
ATAAGTGTAAAGCAGGAAATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAA
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGGCATGTCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022811_MULTIEX1-3/8=2-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.527 A=0.631 C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTCACCAGGAGATCCTT
R:
TTGCAGTGCTCACAAACGTGA
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types