GgaEX0018104 @ galGal3
Exon Skipping
Gene
ENSGALG00000012049 | ZNF148
Description
NA
Coordinates
chr7:29640544-29645408:-
Coord C1 exon
chr7:29645063-29645408
Coord A exon
chr7:29643696-29643821
Coord C2 exon
chr7:29640544-29640667
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCACTTGGTATCTTAACAGATC
3' ss Score
6.36
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTTATTGCACTTAAGAATGAACATTGAAGACAAGCTGGGAGGATTATTTCTTAAATGTGGTGGCATAGACCAGATGCAGTCATCCAGGGCTATGGTAGGGATGGGTGCAGTATCTGACCAGTCCGGAGTGTCGGGAGAACGGCAAGAGGCGGTGCTTCAAGATCGGACTATGGCGCACCAGGAAATTCTTGCACCAGACGAAGTGTTACAGGAAAGTGAACTTCGACAGCAAGAGATGATTTCACATGATGAACTCATGGTCCATGAGGAGACGGTAAAAAATGATGATGACATGGATACGCAAGATAGACTTCCTCAAGGGCTGCAGTATGCTGTTAATGTCCCT
Seq A exon
ATCAGTGTAAAGCAAGAAATTACCTTTACTGATGCATCTGAACAACAGAAACGAGACAAAAAACAAATACGAGAGCCAGTAGATTTGCAGAAAAAGAAGAAAAGAAAACAGCGTTCACCAGCAAAA
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTCTGAAAACCCACAAATCTCATGTTTGTGAGCATTGCAATGCTGCCTTTAGAACCAACTACCATTTACAGAGACATGTCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.700 A=0.833 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127602=Zn_Tnp_IS1595=PU(69.8=71.4),PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGGCGGTGCTTCAAGAT
R:
TGTGGGTTTTCAGACCAAGTGA
Band lengths:
250-376
Functional annotations
There are 0 annotated functions for this event