BtaEX6001441 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040031 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr1:70337189-70372608:-
Coord C1 exon
chr1:70372260-70372608
Coord A exon
chr1:70345762-70345887
Coord C2 exon
chr1:70337189-70337312
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTTTTTTTTAACAGATA
3' ss Score
10.77
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCAGTTATACTTAAGCATGAACATTGACGACAAACTGGAAGGATTATTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCAGGGCAATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCTACCGTGTCTGGGGAACTGCAGGAATCGGTGCTTCAAGATCGGAGTATGCCTCACCAGGAGATCCTTGCTGCAGATGAAGTGTTACAAGAAAGTGAAATGAGACAACAGGATATGATATCACATGATGAACTCATGGTCCATGAGGAGACAGTGAAAAATGATGAAGAACAGATGGAAACACATGAAAGACTTCCTCAAGGACTACAGTATGCACTTAATGTCCCT
Seq A exon
ATAAGTGTAAAGCAGGAAATTACTTTCACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAATCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAACGGAAACAGCGTTCTCCTGCAAAA
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040031-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=0.595 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCAGGAGATCCTTGCT
R:
TTGCAGTGCTCACAAACGTGA
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]