GgaINT0047345 @ galGal4
Intron Retention
Gene
ENSGALG00000012049 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr7:27551489-27554766:-
Coord C1 exon
chr7:27554641-27554766
Coord A exon
chr7:27551613-27554640
Coord C2 exon
chr7:27551489-27551612
Length
3028 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTTTACTCTTTTTAAAATAGATC
3' ss Score
7.82
Exon sequences
Seq C1 exon
ATCAGTGTAAAGCAAGAAATTACCTTTACTGATGCATCTGAACAACAGAAACGAGACAAAAAACAAATACGAGAGCCAGTAGATTTGCAGAAAAAGAAGAAAAGAAAACAGCGTTCACCAGCAAAA
Seq A exon
GTAAGACATTGATTTGGCAAAACCAAGATTAAAAGAACCTGAAGATTTGGTTTACTATGACTAATTTCATTAGCATTTGAAGTAGTGAGGCTGGAAATTGTTTGTTTGCTCAGTAAAGATGCAGGTCTGAAGTTTACTAGAGACCCCAAACAAAACCTGATATAACAGTGTTTTTCTTTGAACTCTTTTTAGCAACGTGAACCCTTGACGTATTTTAACATCTGTCTCTCCAGGGAGTTCTCTCCAAATATTTTTTTTAAATTATGAGTCAGTAGCTTTGTAGAAAACCTATAAATCATTACTCTGTATCAGTCTAACAATAGTTGTGCTTTTCTTTGAGCCTGATAATTTCATATGCTTTATGCATAGTGAAAAGTTTCTAAAAAGAAATCTAAAATGGTAGTTTGGAAAACTCTAAAAAGTTGACTAATATACAAAAAATAATCTACTGGTAGGGAATATTTCTGTGGTCATAATCATCTTCATATATGTATTTATTTATATCAAAAGATTCTTATGAGAGCTGCTGGTTTGTTACTTCAAAAATTGCTTTGTAGATCCATTCATGAAGAGTATGTGTCCCCGTATGTCTGAAAACATAGGTTTTCTTCTGAGACTCGCTTCAGATAAAGACAGAATCATTTCACCTCATGAGGTAGCAGCGTTAGACCTTCTAGTAACTCTCCAAATCAGTCTTCATATTTAAAATGGAACCTATGCTGGATGCTATGAAATGCAAAAATGAGGTCACACAGAAGCGTTAAATAAGCCTACTGTGAAATCAACCTAGGCTGTGTACCCATAGAAGGAAAACTCAACCTAGCACCAAGAAAAATTCCAAAAATTCCTGCTGGGGACCCTTGAGTCCTCTTCAAAGCACTGTCAAATTTGGTGACATTTGTAGTATACTTGTAAAGTTGACAGATTGTTTCAGATTGGGTGTGGAAGCAAGTTCCAAATCCTTCGCATCAGAGTGTGTCCCTTTGATAGAAAAAGGAGATCTAGGTTGAATACCCTCCACAGATCACTTCCATGGAAACACTGCAAGGTAGAAGAGGCATGTGTCCCTCTTTCTACAAGCACGTACTTGCATGCTTCCTTTTTATCTTCCAATCTGTCAATGTCATTCTTTTGAGATAACAAAAGATTGAAAAATGATCAGGAGAATTGTTAAACAGTTTTGTTGTTTTTTTTTTCCAATCTCTCTTCCCTTTTTTTTTTTTTTTTAAGCTTGTCAGAGTAGAATGGCAGAAAGAAGCGAAAGGACTGATGTAGGTGAGAGTCTACTCTAGCTTCAGTTAGCATTCCCGGAGTAATAGCTTGATTTTTCTATCCAAACAGCAGCTGGGACTTTTACAAATGGAAGTCAATTAGTATGTGGAAACATTTTGAATTTTATATCAATGTAGTCATCATATGCATAAAAAGTCAGTTGCTTTTATGAATCCTGTCTTCTTGTCCCCCTTCCATGCACACACACACATGCACACGTGTACACACACACACACACACACACACACACACACACATTTACATGTTCTTGTTAGTTTTATTATGAAAACTGCACTGACAAAGTTAATGTTCTTGATTTAAGAGATGTGCAATGAATGGATGCAGTAGAAAAGCCCAGGGTTAGCATAATTGTGAAATTAAGTGTATTTTCTGCATGATTATTTAAAATATTTCAATATGTGAAAAGAAATCCTTGGAGGTATTTAAATTTATTTTGATTTAATCAGTCAGCCTTTCATTAGTTGAGTGCTGTTGCAGAGCAGAATTTTTCTAACTGTCTGTATCAGAGGCTTACTGGAGCTGTAACATGCCACTCCTCCACACGTATGAATGTGCTTGTCCTTCAGAGTGAATGCACAAGAATTTGTTAGCTGAGACTTTCCCTTTTGCTGAATTTGGATGCAGCAAAGCTAAAAATTGTTTTAAGTAGAACCTACAACATTTGCTACTGTTGCAGAGAGATTATTTCATTTATTCTGACTCCCTTGATCATCATCATTATCATAAAACCTTAAACGTCATAACTAATCAAAATGCAGATGTCTTTCCCCAGCAGACTTTTATTTTATTTTTTAATAACAAGGGACTAAACTCTTTTCCTGAAGGTTTCTTAAGTGCTTCTTTATAGTTCTATTTCCAGTTAAGTAAGCCTTTTGGAAACGTAATGTATATACTGCTTTTCTTACGCTCTTGCCAGAGATAGTAGAGGATTTGGGTGTGGGTTTTTTTGTTTTTTTCCCTATTCTTTTTGACAAATTAAGAGAAAACCTATAATGAGCTTTATTGAATGAGATAGATACGGTGTAATTTTTTTTTTTCAGTTCATTTTTCCAACCTTAAATGAAAATAGCTGCTTTGACACCAAAGCAATTGAGCGTGGAAAGCTGAATTTGTCAAAGAGATGTTCTAACGTGTATTTTACGAGTGAGCCATATTTTACTGAGTGAAAAACTTGGCTGAAGGATAATACTGTTGTCTTGGTTGTTTGGCTTTGGGATTTTGGTTTTTACAATACAATGTTGTCTCCGAGATCGCTGTTGTTATGCAGATGTAGGTAATTTGTATGTCTATCCTACGTAATTTATATGTCTCTTAGCAAATTGCAATCGTGATTTGAAAAAAAGAATATAAATTTTTGCTTTAAAATATGATTATCCATGGTTCGGTGCCCAGAGGTGGTTCGGTTACTTTGCATCCTTTCCAACAGACGGGCAAAGTAAACAGTAGCATCTAAAATGACTCAACTGTGAATAGGGAAACTCTAAGCTGATTTTCCATGAGCTGCTTTTGCCTCCGTCCTGTCTTAATGTACAGTGAGACGCCAGTTGGATTGGACTGCAATTGGAAATGTAAGCTGAAAGCCTGTCACGTAGCTTTATAGAAATTAGTATTGTTTTACCTGAAAAATCAACATTTTCTGCATCAAAAAAAAGTTAATGTTTTTTTTTTTTTTTTGTAGTTAATAAGACAACTTTAGAGGGTAGTGTGAGAACAAATTTTACTCTTTTTAAAATAG
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTCTGAAAACCCACAAATCTCATGTTTGTGAGCATTGCAATGCTGCCTTTAGAACCAACTACCATTTACAGAGACATGTCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049:ENSGALT00000019681:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]