DreINT0181179 @ danRer10
Intron Retention
Gene
ENSDARG00000055106 | znf148
Description
zinc finger protein 148 [Source:ZFIN;Acc:ZDB-GENE-030131-8769]
Coordinates
chr9:38823756-38824291:+
Coord C1 exon
chr9:38823756-38823881
Coord A exon
chr9:38823882-38824167
Coord C2 exon
chr9:38824168-38824291
Length
286 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTAA
5' ss Score
1.88
3' ss Seq
TATTTTCTCCATCTTGTTAGATT
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTAAATATAAAGCAGGAGATGAAAGTGCCAGACTCATTGATTCTAAATAAAAAGGAGAAGAAACCAGGGAGGGACCCATCTGACTGTCACAAAAAGAAGAAGAGAAAGCAGCGCTCGCCTGCAAAG
Seq A exon
GTTTAATATAATCCATTCAAGATTTCTCTATAAATGATCTCTGTCCTTCAATAGTGAAAGAACATTTGTGAAAAAGAAATTGAACAACTTGTGATGAGTTTGTTGAGTGGTCCCTTTGAGCTGATTGTGTGTACACTTAAAAATAACCCTACAAACTATAATGCAGTGTAAGATAAACTGACATTCATTATCAGTCATTTTATTGACCGCCCAGTATCATAACACTAAAGGAGCACATACATGAAATATGAAGTTGTTGTGAACTTTATTTTCTCCATCTTGTTAG
Seq C2 exon
ATTCTCACTATAAACGAAGATGGCTCACTTGGACACCAGAACCCAAAATCTCATATCTGTGAGCACTGCAATGCAGCTTTTCGGACAAACTACCATTTGCAGAGACATGTCTTCATTCACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055106:ENSDART00000077389:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=NA C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=PU(69.8=71.4),PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGCAGGAGATGAAAGTGCCA
R:
CCGTGTGAATGAAGACATGTCTCT
Band lengths:
244-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]