GgaINT0047345 @ galGal3
Intron Retention
Gene
ENSGALG00000012049 | ZNF148
Description
NA
Coordinates
chr7:29640544-29643821:-
Coord C1 exon
chr7:29643696-29643821
Coord A exon
chr7:29640668-29643695
Coord C2 exon
chr7:29640544-29640667
Length
3028 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTTTACTCTTTTTAAAATAGATC
3' ss Score
7.82
Exon sequences
Seq C1 exon
ATCAGTGTAAAGCAAGAAATTACCTTTACTGATGCATCTGAACAACAGAAACGAGACAAAAAACAAATACGAGAGCCAGTAGATTTGCAGAAAAAGAAGAAAAGAAAACAGCGTTCACCAGCAAAA
Seq A exon
GTAAGACATTGATTTGGCAAAACCAAGATTAAAAGAACCTGAAGATTTGGTTTACTATGACTAATTTCATTAGCATTTGAAGTAGTGAGGCTGGAAATTGTTTGTTTGCTCAGTAAAGATGCAGGTCTGAAGTTTACTAGAGACCCCAAACAAAACCTGATATAACAGTGTTTTTCTTTGAACTCTTTTTAGCAACGTGAACCCTTGACGTATTTTAACATCTGTCTCTCCAGGGAGTTCTCTCCAAATATTTTTTTTAAATTATGAGTCAGTAGCTTTGTAGAAAACCTATAAATCATTACTCTGTATCAGTCTAACAATAGTTGTGCTTTTCTTTGAGCCTGATAATTTCATATGCTTTATGCATAGTGAAAAGTTTCTAAAAAGAAATCTAAAATGGTAGTTTGGAAAACTCTAAAAAGTTGACTAATATACAAAAAATAATCTACTGGTAGGGAATATTTCTGTGGTCATAATCATCTTCATATATGTATTTATTTATATCAAAAGATTCTTATGAGAGCTGCTGGTTTGTTACTTCAAAAATTGCTTTGTAGATCCATTCATGAAGAGTATGTGTCCCCGTATGTCTGAAAACATAGGTTTTCTTCTGAGACTCGCTTCAGATAAAGACAGAATCATTTCACCTCATGAGGTAGCAGCGTTAGACCTTCTAGTAACTCTCCAAATCAGTCTTCATATTTAAAATGGAACCTATGCTGGATGCTATGAAATGCAAAAATGAGGTCACACAGAAGCGTTAAATAAGCCTACTGTGAAATCAACCTAGGCTGTGTACCCATAGAAGGAAAACTCAACCTAGCACCAAGAAAAATTCCAAAAATTCCTGCTGGGGACCCTTGAGTCCTCTTCAAAGCACTGTCAAATTTGGTGACATTTGTAGTATACTTGTAAAGTTGACAGATTGTTTCAGATTGGGTGTGGAAGCAAGTTCCAAATCCTTCGCATCAGAGTGTGTCCCTTTGATAGAAAAAGGAGATCTAGGTTGAATACCCTCCACAGATCACTTCCATGGAAACACTGCAAGGTAGAAGAGGCATGTGTCCCTCTTTCTACAAGCACGTACTTGCATGCTTCCTTTTTATCTTCCAATCTGTCAATGTCATTCTTTTGAGATAACAAAAGATTGAAAAATGATCAGGAGAATTGTTAAACAGTTTTGTTGTTTTTTTTTTCCAATCTCTCTTCCCTTTTTTTTTTTTTTTTAAGCTTGTCAGAGTAGAATGGCAGAAAGAAGCGAAAGGACTGATGTAGGTGAAAGTCTACTCTAGCTTCAGTTAGCATTCCCGGAGTAATAGCTTGATTTTTCTATCCAAACAGCAGCTGGGACTTTTACAAATGGAAGTCAATTAGTATGTGGAAACATTTTGAATTTTATATCAATGTAGTCATCATATGCATAAAAAGTCAGTTGCTTTTATGAATCCTGTCTTCTTGTCCCCCTTCCATGCACACACACACATGCACACGTGTACACACACACACACACACACACACACACACACACATTTACATGTTCTTGTTAGTTTTATTATGAAAACTGCACTGACAAAGTTAATGTTCTTGATTTAAGAGATGTGCAATGAATGGATGCAGTAGAAAAGCCCAGGGTTAGCATAATTGTGAAATTAAGTGTATTTTCTGCATGATTATTTAAAATATTTCAATATGTGAAAAGAAATCCTTGGAGGTATTTAAATTTATTTTGATTTAATCAGTCAGCCTTTCATTAGTTGAGTGCTGTTGCAGAGCAGAATTTTTCTAACTGTCTGTATCAGAGGCTTACTGGAGCTGTAACATGCCACTCCTCCACACGTATGAATGTGCTTGTCCTTCAGAGTGAATGCACAAGAATTTGTTAGCTGAGACTTTCCCTTTTGCTGAATTTGGATGCAGCAAAGCTAAAAATTGTTTTAAGTAGAACCTACAACATTTGCTACTGTTGCAGAGAGATTATTTCATTTATTCTGACTCCCTTGATCATCATCATTATCATAAAACCTTAAACGTCATAACTAATCAAAATGCAGATGTCTTTCCCCAGCAGACTTTTATTTTATTTTTTAATAACAAGGGACTAAACTCTTTTCCTGAAGGTTTCTTAAGTGCTTCTTTATAGTTCTATTTCCAGTTAAGTAAGCCTTTTGGAAACGTAATGTATATACTGCTTTTCTTACGCTCTTGCCAGAGATAGTAGAGGATTTGGGTGTGGGTTTTTTTGTTTTTTTCCCTATTCTTTTTGACAAATTAAGAGAAAACCTATAATGAGCTTTATTGAATGAGATAGATACGGTGTAATTTTTTTTTTTCAGTTCATTTTTCCAACCTTAAATGAAAATAGCTGCTTTGACACCAAAGCAATTGAGCGTGGAAAGCTGAATTTGTCAAAGAGATGTTCTAACGTGTATTTTACGAGTGAGCCATATTTTACTGAGTGAAAAACTTGGCTGAAGGATAATACTGTTGTCTTGGTTGTTTGGCTTTGGGATTTTGGTTTTTACAATACAATGTTGTCTCCGAGATCGCTGTTGTTATGCAGATGTAGGTAATTTGTATGTCTATCCTACGTAATTTATATGTCTCTTAGCAAATTGCAATCGTGATTTGAAAAAAAGAATATAAATTTTTGCTTTAAAATATGATTATCCATGGTTCGGTGCCCAGAGGTGGTTCGGTTACTTTGCATCCTTTCCAACAGACGGGCAAAGTAAACAGTAGCATCTAAAATGACTCAACTGTGAATAGGGAAACTCTAAGCTGATTTTCCATGAGCTGCTTTTGCCTCCGTCCTGTCTTAATGTACAGTGAGACGCCAGTTGGATTGGACTGCAATTGGAAATGTAAGCTGAAAGCCTGTCACGTAGCTTTATAGAAATTAGTATTGTTTTACCTGAAAAATCAACATTTTCTGCATCAAAAAAAAGTTAATGTTTTTTTTTTTTTTTTGTAGTTAATAAGACAACTTTAGAGGGTAGTGTGAGAACAAATTTTACTCTTTTTAAAATAG
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTCTGAAAACCCACAAATCTCATGTTTGTGAGCATTGCAATGCTGCCTTTAGAACCAACTACCATTTACAGAGACATGTCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049:ENSGALT00000019681:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=PU(69.8=71.4),PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]