GgaINT0047346 @ galGal4
Intron Retention
Gene
ENSGALG00000012049 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr7:27550738-27551612:-
Coord C1 exon
chr7:27551489-27551612
Coord A exon
chr7:27550822-27551488
Coord C2 exon
chr7:27550738-27550821
Length
667 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GTGGAATTATATTGTTCAAGGTG
3' ss Score
2.88
Exon sequences
Seq C1 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTCTGAAAACCCACAAATCTCATGTTTGTGAGCATTGCAATGCTGCCTTTAGAACCAACTACCATTTACAGAGACATGTCTTCATTCATACAG
Seq A exon
GTACTGCTTGACTTCAAATTTGTCTTTTCTACTATATAAAGAGTTGTTTACTTATGTTAAAAATGTTTTCAGCTCTATGCGAATTTCACATTTAAGACTGTAGCTAACTTGGCATCTAAGCTTAGAGATTCCATGCACCAAAGTGTCAAAAGAATTCCAGGGGAAAAAAAAAAACAGCAAATGTTTAATAAACTGAAGACCTAACTGTTTACAAGGTTTCTTTTCTTTCTTTATCAGAAAGTAATGGGTTGACTTGTAGCCTAAGTGCCAAAATTGACCCCTTTGTAAAATGTGTTCCGGCTGCTTATTTGCCTGATGAGGTATCTCTCTGGTTCGGAGAAGTGAAAAAGGTACTTACCATTACAATAGCTTGCCAGTATCCTGAATGCAGTCTTATGCCAGCATCATGATTGATCTTGTTCATGAAGAAATTAAAGCCATTTCAGATCACTCTTCCATGCTAGACTTAATGTGAATCTTAGGATCATGGAAAGCATTCTGGAGTTCACATACGTAGTCAGGCTGATGTTTTTTGGTAATAGAGTATTTTTGGAATTCGCTCAGATGCTGGTTTTTTTAATAGAGATTTTAATATTCCTCAAAAGTAGTTATCAGAAACAACAGTGTGTAGTTATTAACTTATGGATGTGGAATTATATTGTTCAAG
Seq C2 exon
GTGAAAAACCATTTCAGTGCAGTCAGTGCGACATGCGTTTCATACAGAAGTACCTGCTACAGAGGCATGAGAAGATTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049:ENSGALT00000019681:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTACAATAAATGAGGATGGATCA
R:
CAGTATGAATCTTCTCATGCCTCTGT
Band lengths:
207-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]