HsaINT0186261 @ hg38
Intron Retention
Gene
ENSG00000163848 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr3:125277726-125279247:-
Coord C1 exon
chr3:125279124-125279247
Coord A exon
chr3:125277810-125279123
Coord C2 exon
chr3:125277726-125277809
Length
1314 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GGATGTGAAATTATTTTAAGGTG
3' ss Score
4.42
Exon sequences
Seq C1 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG
Seq A exon
GTATTTCTTGAATTAAAATGGGCTTGTGGCCATTAAAGTTATTATCTTTGTTATTTTCATCTTCGTGTAACTGTCATTCATTCCTAAGACCATAGCTAATCTGGCATTCCAAATCAGAGATTTTGTAGGCCAGAATGTCAGAAGGAAACCAGGAAAAACTCTTAAGTGAGAAAACAATTAGCATGGATGTGTAAAATTAATTAAATAGTCTTAATTGGACACCTGTTTGGCTTAATGTGCTCCATTTAGCTAGAGAAATGATTAAAGAATGTATTATTAAAAGCCTGTTTATCAGTGTTCATTTTTTGTGTGTGCAAAATGTCCAGGCAGAGTTTAAAACATGGATTTGGAAATCAAATATAAATAAATGATAGCTAAGATAATGAAATTGTAGAGAACAGTATTAAAGATGACAGACCTTTGGGTAAACAAACTAGACATGTAAGATGAAATGAGGAAGAAAAACAGTTATAAGGGAGATTCATTGAACTAGGAAAATAGTGTCCCAGAAGCTAGTAGAAGATAGAATTCCAAGCAGGATGTGACCAACAGTGCCAGTGCCCTAGGAGGATAGAGGTTAGAGAACCAAGAAAAAATCTTTGGAATAAATAGCAAGGAGATCACAAGTAGCTTTTCAGAAAGCAGAGTATAAGGGTTAAACCGCAAGTGGGCAGTGAAGAATTTGACTTAGAGTAGACTACTCTTTTAAGGAGGTGTAGTGAAAGAGAAGGAGAGAAAGTACTAAGGTAGAAGTGTTTCAGGACTGAAACAAGGTTTCTCAGCATAGAGCAGGCCAGAGAATACTTTCCTTAAAAGGAAAAGCCCCAGCAGAGAGAGAAAGTTTGAAGAGACAGGATCTTTTAAAAAAGGGATGTTTAGAAAGTTCTGAAGGTTCTGAAGAAAATATGTAAAAGGGCATAAATGGATGGTTAACTAGGGAGAAAACAGGATGGGCGCACCTTCTTCCAGATAAAAAGGAAGAAAAGATGTTTAGGACACGTGAGAACCTGTATTTCTTTCTCACCCCATGATGTTAAAATTCAATTTTAAATTGTTTTATTTATTTCCTTCCCCCCCTTGAATATATAGATCAAATTTAATCTTATTTTTCTGTGATTGTGAGAATATGAATTTTTAAATCCTGGGAAAAAAATTGAGAGGACATAAAATTCTGTTAATAACATTAAAAATTTGTATGGCTATTTTGTAATTTTCCAAAATTTGGGCATCTAAGATTTTTCTTTCCTCAGAAACAGTAACTAAAAACCGTTGTTTTATTCAGTAACTAATTTGTGGATGTGAAATTATTTTAAG
Seq C2 exon
GTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACATGAGAAGATTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163848:ENST00000360647:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTACAATAAATGAGGATGGATCA
R:
CAGTATGAATCTTCTCATGTCTCTGA
Band lengths:
207-1521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains