GgaINT0047346 @ galGal3
Intron Retention
Gene
ENSGALG00000012049 | ZNF148
Description
NA
Coordinates
chr7:29639793-29640667:-
Coord C1 exon
chr7:29640544-29640667
Coord A exon
chr7:29639877-29640543
Coord C2 exon
chr7:29639793-29639876
Length
667 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GTGGAATTATATTGTTCAAGGTG
3' ss Score
2.88
Exon sequences
Seq C1 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTCTGAAAACCCACAAATCTCATGTTTGTGAGCATTGCAATGCTGCCTTTAGAACCAACTACCATTTACAGAGACATGTCTTCATTCATACAG
Seq A exon
GTACTGCTTGACTTCAAATTTGTCTTTTCTACTATATAAAGAGTTGTTTACTTATGTTAAAAATGTTTTCAGCTCTATGCGAATTTCACATTTAAGACTGTAGCTAACTTGGCATCTAAGCTTAGAGATTCCATGCACCAAAGTGTCAAAAGAATTCCAGGGGAAAAAAAAAAACAGCAAATGTTTAATAAACTGAAGACCTAACTGTTTACAAGGTTTCTTTTCTTTCTTTATCAGAAAGTAATGGGTTGACTTGTAGCCTAAGTGCCAAAATTGACCCCTTTGTAAAATGTGTTCCGGCTGCTTATTTGCCTGATGAGGTATCTCTCTGGTTCGGAGAAGTGAAAAAGGTACTTACCATTACAATAGCTTGCCAGTATCCTGAATGCAGTCTTATGCCAGCATCATGATTGATCTTGTTCATGAAGAAATTAAAGCCATTTCAGATCACTCTTCCATGCTAGACTTAATGTGAATCTTAGGATCATGGAAAGCATTCTGGAGTTCACATACGTAGTCAGGCTGATGTTTTTTGGTAATAGAGTATTTTTGGAATTCGCTCAGATGCTGGTTTTTTTAATAGAGATTTTAATATTCCTCAAAAGTAGTTATCAGAAACAACAGTGTGTAGTTATTAACTTATGGATGTGGAATTATATTGTTCAAG
Seq C2 exon
GTGAAAAACCATTTCAGTGCAGTCAGTGCGACATGCGTTTCATACAGAAGTACCTGCTACAGAGGCATGAGAAGATTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049:ENSGALT00000019681:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PU(69.8=71.4),PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=PD(27.9=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTACAATAAATGAGGATGGATCA
R:
CAGTATGAATCTTCTCATGCCTCTGT
Band lengths:
207-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]