RnoINT0167795 @ rn6
Intron Retention
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70539679-70541079:-
Coord C1 exon
chr11:70540956-70541079
Coord A exon
chr11:70539763-70540955
Coord C2 exon
chr11:70539679-70539762
Length
1193 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
GGATGTCAAATTATTTTAAGGCG
3' ss Score
2.28
Exon sequences
Seq C1 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTCTGTGAGCACTGCAACGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATCCATACAG
Seq A exon
GTATTGAATTAAAACGGGCTGTTGGCCTCTACAATTATTATCATTGTTATTTTCATCCTTGTATGAATGTCATCCAGTCTTTCGACTGTAGCTTACTTGGCATTGTCAATCAAAATCATTAGGAGGAAGACGGAAAAGACTTTAAATGGGAAGACAATTAATTAATACAGATAGATACATTTAATAGTTGTAATTGGGTACCCACTTGCCTTAAAGCTCTCTTTTCAACTAGAGAAACTCTTCTCAACTGAGGCTGCATTAGGAGCCTGTTGCATTCATCTTTCTGTGCTAGGTATGTGATCAGCACAGGCAGTGTTTGAAAATCAGATATTAGAGATGATAGCTAACAGAAGTAGAAGTTAAAAAAATCGTGAAATTGTTGAAAATAGAGCTGAAGACTAATCACACACCTTTAGGCAAAACAAGCTAGAAATGTTAAATGACTTGGTAGATGAAGGGGATGGATTGAAGGAGAAAATACAGTGGTGGCCAGAAGCTGAAGGAGAAAAGATTTAAGGAGGCCTCAGGGTAGAGAGAGGATGGCCACAGTCTGTGGAACAGAGGGGGTGATTTCTGTAAGGCTGAAGCCACAGTGTAGGGAAGCACTTGAGACTGAGACCGCCTGCCTGTGTGTAAGGTGTGATGGGAAGAAGGAGGAAGGTGCCAAGGGGCGTTGAGTGCGCATGAAAGCCAGGCCTCCTCCCCATGGGCAGACCACAGCACTAGGAAGTTAATGGGTTCCAACAGACACAGTTTCCAAGGACGGGGTTCTCTCCAGGGTGTTTATACAGCTCCGAACTCTGAAGAACGTAGGTAAAAGGGCAGAGAGGGACGGCCAGCCACCTAGAACAGGATGCGCATGCCTTCAGACAGGGAAGAAGCCATATTTAAAGCAGACACCAGGACATCTGGAGAGTGCTTTTTTAGCTTGTATATCTTTTAAGTTTTGTTTTCTTCCTTATTAAAAGGATATAAATGAAATTTTATTTTTTGTGTGATTGTAAAAATGTGTAAGTCCTGGAGGAAAATTTTAAGGTAAAGTATAACTGTTAATAAAAAATGTTTTTAAAAATCATGCAGTGTTTTAAAATTTTACAAAATTTGGGCATCTAAGATTTATTTATCCTTAGAAGTAATGACTTAAAATACTGTTTTATTCACTAACTAATGTATGGATGTCAAATTATTTTAAG
Seq C2 exon
GCGAAAAACCGTTTCAATGTAGTCAGTGTGACATGCGTTTCATACAGAAGTACCTGCTCCAGAGACACGAGAAGATCCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789:ENSRNOT00000002435:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTACAATAAATGAGGATGGATCA
R:
AGTATGGATCTTCTCGTGTCTCTGG
Band lengths:
206-1399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]