DreINT0181180 @ danRer10
Intron Retention
Gene
ENSDARG00000055106 | znf148
Description
zinc finger protein 148 [Source:ZFIN;Acc:ZDB-GENE-030131-8769]
Coordinates
chr9:38824168-38824464:+
Coord C1 exon
chr9:38824168-38824291
Coord A exon
chr9:38824292-38824380
Coord C2 exon
chr9:38824381-38824464
Length
89 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GTAAAATGTACTATTTGCAGGTG
3' ss Score
6.64
Exon sequences
Seq C1 exon
ATTCTCACTATAAACGAAGATGGCTCACTTGGACACCAGAACCCAAAATCTCATATCTGTGAGCACTGCAATGCAGCTTTTCGGACAAACTACCATTTGCAGAGACATGTCTTCATTCACACGG
Seq A exon
GTAAGTGATGTAGTATTCCTTACCCTAGTCCTGTGGGAGTAATAGTTATATAAAGAACAAAACTATGAAGTAAAATGTACTATTTGCAG
Seq C2 exon
GTGAAAAGCCTTTCCAGTGCAATCAATGCGACATGCGCTTTATTCAGAAGTACCTGCTTCAGAGACATGAGAAGATCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055106:ENSDART00000077389:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PU(69.8=71.4),PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=PD(27.9=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTCACTTGGACACCAG
R:
TCTCATGTCTCTGAAGCAGGT
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]