BtaINT0164939 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040031 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr1:70335886-70337312:-
Coord C1 exon
chr1:70337189-70337312
Coord A exon
chr1:70335970-70337188
Coord C2 exon
chr1:70335886-70335969
Length
1219 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GGATGTGAAATTATTTTAAGGTG
3' ss Score
4.42
Exon sequences
Seq C1 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG
Seq A exon
GTATTTCTTGAATTAAAGTGGGCTTATAGCCATTAAAATTATTATCTTTGCTATTTTCATCTTCTTGTAAATGTCATTCATTCCTAAGACTGTAGTTAACCTGGCATTTCAAATCAGATTTCATAGGCCAGGATGTCACAAGGAAACCAAGAAAAACTTTAAATGAGAAAACAATTAGCATGGATGTGCAAAATTAATTAGCTTAGTTGAACACTTTATTTGGCTTAATGTATTCTTTTTAACCAGAGAAACAGTGAAAGAATGAACTATTAAAAGCTGGTCAACATTTATTTTTCTGTATAAGATGTCCAGATGGAATTTGAAATGTGAATTTGGAATCAAATATAAATCAAAAGTTAGACCATAAATTTGTGGAGATCAGAGCAAAAGACTGATCACAGATCTTTGGGGAAATATTACTAGACATATAAGTTGAGTTAAAGGGTGGAGAAGGAGACAAAGTAATAAATAATAAGGTAGATTTGGTGAACTGGTGAAATACACCCAGAAACCAAAAGAGGAGAGAATTCCAAGGAGGGTATGATCAATAACTGCACAACCTTCTGAGAGGAGAGCGAGAGAGAGCAAGAGAGAGAACTGAGAACAGATCACTAGAATAAACAGCAAGGAGATCATTAGTATCTTAAAGCAGAGTATAAGGGTTAAAGGACAAATGGGTGGTGAAGAATTTGAGACATAGGTTGGACTATGAAAGGAAAGGCTCCAACAGAGAAGGAATATTTGAAGAGACAGGATTATTAGTTTTTTAAAGAGGATGTTTAGAAAATTTTGAAGGTTCTAGAGAAAAAAGTGAAAAGGCATAAAGTGGTGGTTAGCCAGGGAGAAAAAGGTAGGTGGATCTTCCTCCACAGAGAAAGAAAAGCTGTTTAAGACACTTGGTAACCTGTGGAGGCCTTTCTAGCCTCATGAGTTTTAAATTCTATTGTAAATTGTTTTATTTATTTACTTTTTTTTTTCCCTTGAAGGATATGAATCATTCAGTCTCATTTTTGTGTGGTTGTGAGAATGTGAATTTTTAAATCTTGGTGGGGGGGAGATTGAGAGGAAATAAAATTCTATTAATAGTATAAAACCTTTGTATGCGTAATTTGCAATTTTTCAGAATTTGGGCTTCTAAGATTTCTCTTTCCTCAGAAATAGTTAACTCTAAACTGTGTTTTATTCAGTAACTAATTTGTGGATGTGAAATTATTTTAAG
Seq C2 exon
GTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTACAGAGACATGAGAAGATTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040031:ENSBTAT00000000628:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTACAATAAATGAGGATGGATCA
R:
CAGTATGAATCTTCTCATGTCTCTGT
Band lengths:
207-1426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development