MmuINT0178648 @ mm9
Intron Retention
Gene
ENSMUSG00000022811 | Zfp148
Description
zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
Coordinates
chr16:33466941-33468269:+
Coord C1 exon
chr16:33466941-33467064
Coord A exon
chr16:33467065-33468185
Coord C2 exon
chr16:33468186-33468269
Length
1121 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
GGATGTCAAATTATTTTAAGGCG
3' ss Score
2.28
Exon sequences
Seq C1 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGGCATGTCTTCATTCATACAG
Seq A exon
GTATTGAATTAAAATGGGCTTGTGGCCATTAAAATTATTATCATTGTTGTTTTCACCTTCGTATAAATGTCATCTAATCTTAAGACCATAGCTTACTTGGCATTGTCAGTCAAAATCTGTAGCCAGGCTATCAGGAGGAAACCGAGAAAGACTTTAAATGAGAGGACAATTGATTAATGCAGATATATCCATCTAATAGTGTTAATTGGGTATTCACTTGCCTTAAAGTTCTCTTTTTCAACGAGAGAAAATGCTTACGGATGTAGTAAGAGCCTGTTGGATTCATTTTTCTGTGTATGAACAGCACAGACAGTGTTTGGAAATCAGATATTAGAAATGGTAGCTAACAAAAGTAGAAGTTAAAAATCGTGAAATTGTTGAAAATAGAGCTAAAGGCTGATCACACACCTTTAGAACGGCAAGCTAGAAATATAAATGACTTGGTGGGTAAAGGAGATGTGTTGAAGTAGAAAATGCAGTGATAGCCAGAAGCCGATAGAGAAAGGATTTAAAGAGACCTCAGGGTAGAGAGACCGTGGCTGTAGTCTGTGGAACAGAGGTGAGGACTCCTGTAAGCTTCAAGCCCAGTGGGTGAGGAAGCACTTCAGACTTGAGACTGCCCTCGTAGGGTGTGGTGGGAGGACGGAGGAAGGTGCCAAGGAGCAGTGCAGCATGGAAGCACAGCTTCCCCTGGGCAGACCACAGCACTGGGGATTGAATTCGGTCTCCAGCAGAGACAGACTGCTTCCAAGGACAGAGGTAAAAGGGCAGAGGGGGATGGTTAGCCACTGAGAACAGGATGTGCATGCCTTCAGATAGGGAACACCAGGACTCTGGACAGTGCTTCCTTAGCTCGTATATCTTTTAAGTTTTGTTTTCTTTCTTATTAAAATGATATAAATGAAATTTTATTTTTTGTGTGATTGTGAAAATGTGAAACTTTAAATCCCGTGGGAAATTTTTGAGGGAAAGTATAACTGTTAATGAAAAATGTTTTTTAAAATCATGTGGTGTTTTAGAATTTCCCCAAATTTGGACTTCTAAGACATATATCCTCAGAAGTATGACTTAAAGTGTTGTCTTATTCATTAACTAATATATGGATGTCAAATTATTTTAAG
Seq C2 exon
GCGAAAAACCGTTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACACGAGAAGATCCATACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022811-Zfp148:NM_011749:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PU(70.5=73.8),PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=PD(27.3=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTACAATAAATGAGGATGGATCA
R:
CGGTATGGATCTTCTCGTGTCT
Band lengths:
207-1328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: