GgaINT0047347 @ galGal4
Intron Retention
Gene
ENSGALG00000012049 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr7:27545166-27550821:-
Coord C1 exon
chr7:27550738-27550821
Coord A exon
chr7:27545285-27550737
Coord C2 exon
chr7:27545166-27545284
Length
5453 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTTTGTTTTTTTTTTATCAGGTG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GTGAAAAACCATTTCAGTGCAGTCAGTGCGACATGCGTTTCATACAGAAGTACCTGCTACAGAGGCATGAGAAGATTCATACTG
Seq A exon
GTGAGTATAGTGCCTTGAGTATCTTTACTGGCGTGCTTAAAAACTGTTTCCCCACTCAGGCAAGGTTTCTCGTAAGAAGTATGCAGCCTAAAACCCTGTCGTAGTTTGGTTTGACTTAACAAATGTTATAAAACTTGAGAAAACAAATTAGCTTTGTGCTTTTGACTTGCTCCACTTTTCTTTGGCTGTAAAGTGAGTATAAACTCTAATAGGCAATTTTGAAAGTCTCTAAATAAGCCCAGAGTGATAAATCTTGAGATTTGTGCATTCATAAAAGTCAAGGTTTGGTAAGCAGTTGTATCTTCTGTCGTATCAAGTTAATTTGGACAGCGCGGACTTCCAAATCACTTTTTCGTAGATTTTTTTTAAGTTTGTTTTGGAATTCAATGGATGAGTGCCAGGACTAAAATGGCCAAAATGCCTAACCCCAGAGGTCTCAGAGTCAGCTTTACTTCTACCTTTTTTTTCTTTTTCTTTTTTTTTTCCTTTTTTGAAAGGTTTAATTCAGAACTGTTCTAAAAATAAGAGCCTTAGTTTAAAAATACGCAATGGAGGTCAAACAAGGCCCAGAGTTTTAAGCCAAAGAGAGTTAAAGTTTATACACGTTTATTTTTATTATTATTATTTTGTTGCACTGCACAAAACCACATTCTTTAACAGGTTTGGCTTCGTTGGGTTTTTGGCATTTTGGTGCATGGCCTTTCAATCCCTCTTTAAATATTTTGTAACGTGGTCCCTTTGGACTAGATGCCAACTTCTCAGCCTCTTTTACAGAAAAGCAGAGCTGGTGAATGTGCACAGTGTTTCTTGGCTGTAGCATTTAAGTGGATATGAAAGCTACTAGCACGCAGTGCAGTGTGTGCATGTGTGTGAGTTGAGAGGGAGAAAAGTCTCCGCAAAATGAATTTTCAGAGCAGTGTACAGGGAGTTACATGCACAAATGCCCTGTTGTTTATGGGATTTTTGTATCCTAAGTTGCCACGAGTCCAGACTAAGTAGGTTTCCTTCAGCCAGTCAGCCACAGAAGAGTCCTCCATTCTTCTGTCCAGTGTCTTTGTTCCGTTCATCGTCTTTCCTCTGGCTCTGAATTGGTGAACCATGCTGCCTTCACTTTGTGTAGATGTTGTTCTTGAAAAGAATGCTCATTCATTCTCGTTTGTCTGTCTATTTGCCTCCTACCCCAAAAGAACAGACAGAAATTTAAGCGTAGGGTCTTTTTTTCCACATTTTTCAGAAGATTTTTTTTTCATGATGATTATTCCCTGTACGTGGCTTTGAAAATGCGAGTCTGGGCAATGTAGTTAATTAACGCTTGACTGCAAATATTTTCTAACTGAATTTGATTATCTTTTGAAATTCAGTTTCTGGCTCTAATGACAGTTGTGCTGCCTTGACTGTAAGCTTTGCAGGCGGGTTGGGCATGGTGGTGGGGCTGTTGGTTTTTTTTCTGGCTCTCACATACACCATTTTTTGCGTAGCAGAGAGAAAGCAGCCATTTAACAAATTAACCACATTGTTATTGTAATCTTTAGATAACTGTTTTTCTCTTATCCTCAGCATCCTGAGGTATAGCTCGGGAAAATTAAAACTGATGGTTGTGTCTGAATGGCTGAATTGTGGGTGTTTTCCTAGATGACAAGCAGTAAATGCTTAGGAGAAATCACTGAAGACCCAGCTTCCAGGAGTGTAATTTTCACTTTATTGAGCTAGTTTCCAGTAGGCAATCATCTCACGTTTTTAGTGTTAGTTACTGGATGTTATAGGGCTTGTTTAAAAAATAAAAAATAACAAACAACACTGATCTATTATTATTTTTTCTTTTTAGTAACCCCCCCCCCCCATCACCCCATCCCTCCCCAATAAAAGAAAGGGGAAAAAAAAGGGGGTTTCTTTTTCAGTTCCATTTAGTTAGTAAATATTTGCCCAGTGCTCTGTATGAGGGCTTGGCCCAGTTGTAGCATGGCTAATTGTCATTCTGCATACCCATCTGTGTTTTCACTCCTGTACGACAGTATTCACAATAGGGCCATAGCTGTTTGTGTGGTGTTACTGTGTTGTGCAGAGCTGCACAACTGAACCCATCCAGGAAAGCAGAAAAGGGGAATTTTCAGTTAGTTGATATGACAGTAGGGCGAATGGTGGGCCTGTGTTTTTGCTTTGGTGGAAGTAAAGGAAAGCTCTCTTTGTTATTACTCGTACTCTTTAAGAAATACGCCTTAAATAATCTTTTGTGTATAGATTTATTTTGCATTTTTATTCCCATGAATGGTTGTTTTTCAGCACCAGTTCTTGCACTGTGCTCAAATATTCAAGAACAGATTTTTTTTTTTCAAAAGGCATTTATCAAATTTTCAAGTTTATTATTTTAAGATAATCAGAGATGGTGGTTACACTTAGAAGCCCCATTTAACGTCTCATACAAGGCCTGAATTTATAGGTGCTCCCACTAGTTCCAGGGTAATTTGAATTCAGTCAAATGAAACGTTATGATGGAGGTAGGAAGCAATCAATGAACAGCCTTATTCTGTGTAAATAATTAAGTAGTTGCATCTAAAAGCAGACATTACATTAATACAAAATTCACTTCCTAGAAACAATTGGACGAAGAGGAGGGTGGCAGTGCAAGAGGCCTTGCTGCTAACCTTGCCACTAGTGATGCAGCAAATTGCTGTCTCAGAAAAGGAACAGTCTTTGGTACACGAATTCTTTCATCTTTTGAGCTTACTGGGCTCATGAAGATATCAAATGTTTGATTCTTTCTTCTTTTTTCCCAAATGTCTGCTTTATTTTTGCTGAGAAATATTTCTGTATACCGTATCTGCTCGTGCATTCATGTGTCATAATTCTGTAACCCACCCTACTTTCCATTTTAAACACAGAAGATGAGATTGCATTAAAAAAAGAAAAGACAACACTTGGGGCTAATCATCCAAATACCTTATTATTCCATCATGATGCTTTTTATTGCCTTCTTTTGTATTTTATCATTTGTATTTTGCCTGTTTAGATTTTAAACTACCCTGGAGATTTGCTGCTATAACTGTTAAAGACTTGATGCAGTATTGAGAGCCACACTTTACCAACTGCTCTAGCACTCAGTTTTGACACATTTCCAATGTAGACACAAAATATAGACTGTTTTTGTAAATAATGCATATAGTTTGATTTTTTTAATGTTTTTTTTCTACATCTGAATCTTTCCCACTCACTCATTTCAGAAATATAAGTTTTAGATTCTCCCTATGCTACCAAAAGGTTATTATTAATGATCTCCATTTCCAATTTATCTTGTTTTAAAAGTAAAGCCAAATTTCAGAAGGCATCTGAAGTTTCAGGCTTCTGCTAAGAAAAGAGCATTATAGAAAGCTTATCTTTATATTCATTTTTAATCTTTTTCTAATATTATATTTCCTTATGAAGATTGAATTGAGAATTAAGTATGGTATCAGTTCCACAAAGCGTTTCTTGATTTTACTTTCCAGGCTGTTCTGGAATTCAACTGGAAAGTATTATTTTCTGTGCAGCGTCCCCACATTTTTGTTCTTATGGAGGTATGGCCAGCAGTGCCTTTTGATACACCTTCAGAGTCTCTAAAATAACTCTCACAATCTGCTCCTTTTCCACACGGCAAATTTGGAAACCACGTTGCAGCGGTACAAGGTCTGGCAGAGGTTTGCTTCTGCCACCTTGCCATTGGTATGGAAATACTCTGCAAGGAAACAACTGAAACCCCTTTTTAACCCGATTTAAACCTCGGATAGGAAACAGAGCAGTTAGTCTTTTGCCGGTGAATAGCCGGTTTGAGTAGGTAAATGTTAAGGATCCTGGGACCACTCCCTTCCAGAGGTGGGTGTGAGGCTGAAGGTAAGTGTACCACTGAAGGTTTAAGAGGCTGAAAGGTAACTCAGACAGCGTAACGAGAGTTGTTCAAAGGGCTGTTTTAAAAGAAAACTTGAGGTGGAATAGTGGAGAAAAATGAAATAAAACATAATGTAAAAAAGGATTTAGTAGCCTTTGGGAATTGAAGAGTTTGGTGTGTACAACAGTAAAACAGTGAGGCCTCCTCTTCTTTGAAAGTGAAGGCAGGGATGTGAATTCAATGCAGGAAGTCTCACCAGGCTCAATGCACATAAAAGCATCACAGTAGTAGGTACACCTAACAGATGAAGAGAACAGGACAGGAAAAGTGAAGATGGAGTTTGAAAATAAAAGAGTAGACCAGGGAGGAGGATTTGCTTGTAGACAGTTCCAGTGAGGGATATGTGATAGGTGTTGAGAAAAACAAAATTTTCCAGTGGTTATTAATAAGCAGGGAGTCAAGAGAGTCAATTCTCCAATTGAATGTGAAAGAAGAGCGAAGATGCTGAGCTTGTGAGCCAGTAGAAAAAGAATGGGTGGTAACTGAGAGATCTTAGATGGGGAGATAATTTGCTTTAAGGGAGAATAAATTGGAATTATTTCATCCAGGAAAGTGTTTGAGAAACCACATTGTGAGGTAGGAATTAATAACTGGAAATTGGAGATAGGCTTACAGAGAGAGAGAGAGAGATTTAGAAGTTGCTTAGAACTAAGAAGGTTGAAACTGGGGACATTAATGATCTGACGTGGAGCAAATGTGTGGGTGATGCAGCTATTTTCCATTCTAGTTTCTATAAATACTGGCATCTTATTTTAAGGTACAGACATATCTACCGTATTTCCATTTATAGAAGGATGTGGTTAAATTTCTCTATTCTAAACAGAAAATAGACAGTAACAAAGCAAAATTTTAACAAAATTAATACAATGTTACTAATTATTAGTTGTCATGTTATATACTATATATTATGGGTCATTGTTGTATACAATTTAATAAAACAACTTTTAAGAATAAAATTACCTCAGAAAAATAGGAATAATCTGCATATTGCTGGAATCAAGATAGTTATTTCTATTTCACATACAGATAAGGGGAAAGAAAAAAAAAAGAAAATAGCAAGTATCCTTCAAAACTTCTAAACTGAAAGCTTGAAAATGCATAATTCTCTTCTAGGAGGGATAGGATAGAGTGACGAGAGTTGGTGAGAGAATTAAGGTGTTTTTATATAATCCTCTGCCTTGAGATTATGTGGCAACATTTAGGAAGGTTATCTTTGTTGTTCTTCATTTGTTAGGTTTAAGACAGACATGTGCATCTACATTAGAAAGAGGGGGAAGAGAATTCTAAAGGTGTTTCCATTTTTTTTCTGTAAAGTTTTATGCTAAATTAACTGAATGAGCTATGCTATGCCTCAGCTTCAGTGCTGAGAGAACTGTGAGCAAGCCCTATACTGTTTTACAATAGCAACAGACTAAGTCCTCTTCTTTATTACTGCTAATAGAGAATGTAATATTTGTCCTGCTAATTGTGTGGAAGAACATTGATGGGTTTTTCTTAGATTAATGTTGCTACATGTTTGTTTTTTTTTTATCAG
Seq C2 exon
GTGAGAAGCCATTTCGTTGTGATGAATGTGGTATGAGGTTTATTCAGAAGTATCACATGGAAAGGCACAAAAGAACTCACAGTGGAGAGAAGCCTTACCAGTGCGAGTATTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049:ENSGALT00000019681:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]