DreINT0181181 @ danRer10
Intron Retention
Gene
ENSDARG00000055106 | znf148
Description
zinc finger protein 148 [Source:ZFIN;Acc:ZDB-GENE-030131-8769]
Coordinates
chr9:38824381-38824743:+
Coord C1 exon
chr9:38824381-38824464
Coord A exon
chr9:38824465-38824624
Coord C2 exon
chr9:38824625-38824743
Length
160 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
CTGTCATTTAACTTTTGTAGGAG
3' ss Score
8.3
Exon sequences
Seq C1 exon
GTGAAAAGCCTTTCCAGTGCAATCAATGCGACATGCGCTTTATTCAGAAGTACCTGCTTCAGAGACATGAGAAGATCCATACAG
Seq A exon
GTTAGCAAAACGTGTCATTTCTTTATACTTGTGTTCACTTACCTATATTTATAAAAGCAGTCTTGCAAAGTCCCCATTTTATATCAACTTTCAGGCTTACTCAATTTGCCTAAATAGTTTGTTATATCATTTATAAAATCCTGTCATTTAACTTTTGTAG
Seq C2 exon
GAGAAAAACCCTTTCGCTGTGATGAGTGTGGAATGAAATTTATACAGAAGTACCACATGGAGAGACATAAGAGGACACACAGTGGAGAAAAGCCTTATCAGTGTGACTATTGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055106:ENSDART00000077389:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.144
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PD(27.9=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAAGCCTTTCCAGTGCA
R:
CTGATGGCAATAGTCACACTGA
Band lengths:
203-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]