GgaEX0018106 @ galGal3
Exon Skipping
Gene
ENSGALG00000012049 | ZNF148
Description
NA
Coordinates
chr7:29634221-29640667:-
Coord C1 exon
chr7:29640544-29640667
Coord A exon
chr7:29639793-29639876
Coord C2 exon
chr7:29634221-29634339
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTGGAATTATATTGTTCAAGGTG
3' ss Score
2.88
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTCTGAAAACCCACAAATCTCATGTTTGTGAGCATTGCAATGCTGCCTTTAGAACCAACTACCATTTACAGAGACATGTCTTCATTCATACAG
Seq A exon
GTGAAAAACCATTTCAGTGCAGTCAGTGCGACATGCGTTTCATACAGAAGTACCTGCTACAGAGGCATGAGAAGATTCATACTG
Seq C2 exon
GTGAGAAGCCATTTCGTTGTGATGAATGTGGTATGAGGTTTATTCAGAAGTATCACATGGAAAGGCACAAAAGAACTCACAGTGGAGAGAAGCCTTACCAGTGCGAGTATTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049-'3-5,'3-3,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.175
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PU(69.8=71.4),PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
PF127602=Zn_Tnp_IS1595=PD(27.9=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7)
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGCTGCCTTTAGAACCA
R:
TGCAAACAATACTCGCACTGGT
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event