HsaEX0073077 @ hg19
Exon Skipping
Gene
ENSG00000163848 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:12933]
Coordinates
chr3:124953055-124998021:-
Coord C1 exon
chr3:124997968-124998021
Coord A exon
chr3:124996570-124996653
Coord C2 exon
chr3:124953055-124953173
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGATGTGAAATTATTTTAAGGTG
3' ss Score
4.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG
Seq A exon
GTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACATGAGAAGATTCATACTG
Seq C2 exon
GTGAAAAACCATTTCGCTGTGATGAATGTGGTATGAGATTCATACAAAAATATCATATGGAAAGGCATAAGAGAACTCATAGTGGAGAAAAACCTTACCAGTGTGAATACTGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163848-'15-12,'15-11,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.164
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PU(70.5=73.8),PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
PF127602=Zn_Tnp_IS1595=PD(27.3=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCCTTTAGAACGAACT
R:
AACAGTATTCACACTGGTAAGGT
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)