Special

MmuEX0053048 @ mm9

Exon Skipping

Gene
Description
zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
Coordinates
chr16:33456962-33495549:+
Coord C1 exon
chr16:33456962-33457087
Coord A exon
chr16:33466941-33467064
Coord C2 exon
chr16:33495431-33495549
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTTTAAACTAGATC
3' ss Score
7.55
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATAAGTGTAAAGCAGGAAATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAA
Seq A exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGGCATGTCTTCATTCATACAG
Seq C2 exon
GTGAAAAACCATTTCGCTGTGATGAATGTGGTATGAGATTCATACAGAAATATCACATGGAAAGGCACAAAAGAACTCACAGTGGAGAGAAGCCTTATCAGTGTGAATACTGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022811_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.595 A=0.190 C2=0.150
Domain overlap (PFAM):

C1:
NO
A:
PF127602=Zn_Tnp_IS1595=PU(70.5=73.8),PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTACTGATGTATCTGAGCAACTGA
R:
AAGCAGTATTCACACTGATAAGGCT
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types