DreEX6037681 @ danRer10
Exon Skipping
Gene
ENSDARG00000055106 | znf148
Description
zinc finger protein 148 [Source:ZFIN;Acc:ZDB-GENE-030131-8769]
Coordinates
chr9:38823756-38824464:+
Coord C1 exon
chr9:38823756-38823881
Coord A exon
chr9:38824168-38824291
Coord C2 exon
chr9:38824381-38824464
Length
124 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTCCATCTTGTTAGATT
3' ss Score
7.27
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTAAATATAAAGCAGGAGATGAAAGTGCCAGACTCATTGATTCTAAATAAAAAGGAGAAGAAACCAGGGAGGGACCCATCTGACTGTCACAAAAAGAAGAAGAGAAAGCAGCGCTCGCCTGCAAAG
Seq A exon
ATTCTCACTATAAACGAAGATGGCTCACTTGGACACCAGAACCCAAAATCTCATATCTGTGAGCACTGCAATGCAGCTTTTCGGACAAACTACCATTTGCAGAGACATGTCTTCATTCACACGG
Seq C2 exon
GTGAAAAGCCTTTCCAGTGCAATCAATGCGACATGCGCTTTATTCAGAAGTACCTGCTTCAGAGACATGAGAAGATCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055106-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=0.238 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127602=Zn_Tnp_IS1595=PU(69.8=71.4),PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF127602=Zn_Tnp_IS1595=PD(27.9=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGGAGATGAAAGTGCCA
R:
CTGTATGGATCTTCTCATGTCTCTGA
Band lengths:
202-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]