RnoEX0101065 @ rn6
Exon Skipping
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70516813-70550977:-
Coord C1 exon
chr11:70550852-70550977
Coord A exon
chr11:70540956-70541079
Coord C2 exon
chr11:70516813-70516931
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTATTTTTAAACTAGATC
3' ss Score
6.74
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATAAGTGTAAAGCAGGAGATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTGAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAA
Seq A exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTCTGTGAGCACTGCAACGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATCCATACAG
Seq C2 exon
GTGAAAAACCATTTCGCTGCGATGAGTGTGGAATGAGATTCATACAGAAATATCACATGGAAAGGCACAAAAGAACTCACAGTGGGGAGAAGCCTTACCAGTGTGAATACTGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.190 C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAAGCAGGAGATTACTTTTACTG
R:
GCAGTATTCACACTGGTAAGGCT
Band lengths:
234-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]