HsaEX0073083 @ hg38
Exon Skipping
Gene
ENSG00000163848 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr3:125277726-125288228:-
Coord C1 exon
chr3:125288103-125288228
Coord A exon
chr3:125279124-125279247
Coord C2 exon
chr3:125277726-125277809
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTTTTGAACTAGATC
3' ss Score
9.24
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATAAGCGTAAAGCAGGAAATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAATCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGTTCTCCCGCAAAA
Seq A exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG
Seq C2 exon
GTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACATGAGAAGATTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163848-'27-43,'27-42,29-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTTTACTGATGTATCTGAGCAAC
R:
ATGAATCTTCTCATGTCTCTGAAGCA
Band lengths:
186-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development