MmuEX0053048 @ mm10
Exon Skipping
Gene
ENSMUSG00000022811 | Zfp148
Description
zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
Coordinates
chr16:33456876-33468183:+
Coord C1 exon
chr16:33456876-33457001
Coord A exon
chr16:33466855-33466978
Coord C2 exon
chr16:33468100-33468183
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTTTAAACTAGATC
3' ss Score
7.55
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATAAGTGTAAAGCAGGAAATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAA
Seq A exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGGCATGTCTTCATTCATACAG
Seq C2 exon
GCGAAAAACCGTTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACACGAGAAGATCCATACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022811-'25-16,'25-14,32-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=0.183 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTGATGTATCTGAGCAACTGA
R:
CGGTATGGATCTTCTCGTGTCT
Band lengths:
186-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types