RnoEX6001998 @ rn6
Exon Skipping
Gene
ENSRNOG00000020389 | Capn12
Description
calpain 12 [Source:RGD Symbol;Acc:1307341]
Coordinates
chr1:87074472-87075075:+
Coord C1 exon
chr1:87074472-87074529
Coord A exon
chr1:87074845-87074915
Coord C2 exon
chr1:87075013-87075075
Length
71 bp
Sequences
Splice sites
3' ss Seq
GCTGGATTTCTTTTTTGCAGCTA
3' ss Score
6.9
5' ss Seq
GGGGTACGT
5' ss Score
7.73
Exon sequences
Seq C1 exon
GAGGAGGAGCTCAATGCTCTCCAGCTGCAGACCTTAATAAGCATTGCTCTGGAGCCTG
Seq A exon
CTAGGAACAACACCAGGACCTCTGGAGAGATTGGCCTTAGGACCTGCGAACAGCTTGTGCAGTGTTTTGGG
Seq C2 exon
CGTGGGCAAAGATTGGCCCTATACCACTTCCAGGAACTCTGGGGCCATCTCCTGTCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020389-'15-16,'15-15,16-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCAGCTGCAGACCTTA
R:
CTGCCATGACAGGAGATGGC
Band lengths:
106-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]