RnoEX6002007 @ rn6
Exon Skipping
Gene
ENSRNOG00000020389 | Capn12
Description
calpain 12 [Source:RGD Symbol;Acc:1307341]
Coordinates
chr1:87066289-87067421:+
Coord C1 exon
chr1:87066289-87066629
Coord A exon
chr1:87067089-87067158
Coord C2 exon
chr1:87067303-87067421
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCAGAGCCCTAATCTTGCAGGAG
3' ss Score
3.9
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCATGCTTAAAGACCCCCAACAGGGTACAAATGGAACAGAAGCCCCGCCTCATGACTCAGGAGGTTAAAGGGCTTGGGTCCTTCTGTGTGCCCAGAGTGTCCGGATGGCGAGTGGCAACAGGAAGGTCACTATCCAGCTGGTGGACGACGGGGCCGCGGCTGGAGCTGGGGGCCCACAGCTCTTTAAGGGTCAGAACTACGAAGCCATCCGAGCAGCTTGCCTGGATTCCGGGATCCTGTTTCGTGACCCTTGCTTCCCTGCTGGCCCTGATGCCCTTGGCTATGACAAGCTGGGACCTGACTCAGAGAAGGCCAAAGGGGTGGAATGGAAGAGGCCTCAT
Seq A exon
GAGTTTTGTGCCGAGCCCCAGTTCATCTGTGAAGACATGAGTAGAACAGATGTGTGCCAGGGCAGCTTGG
Seq C2 exon
GAAACTGCTGGCTTCTAGCAGCGGCTGCCTCTCTCACGCTGTACCCCAGACTCCTGTACCGGGTGGTCCCCCCTGGGCAAGGCTTCCAAGATGGCTATGCTGGGGTTTTCCACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020389-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.4=43.0)
A:
PF0064816=Peptidase_C2=FE(7.7=100)
C2:
PF0064816=Peptidase_C2=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGCTATGACAAGCTGGG
R:
GGAAAACCCCAGCATAGCCAT
Band lengths:
178-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]