DreEX6085039 @ danRer10
Exon Skipping
Gene
ENSDARG00000055338 | CAPN1 (2 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr21:27468170-27471091:-
Coord C1 exon
chr21:27470840-27471091
Coord A exon
chr21:27468483-27468552
Coord C2 exon
chr21:27468170-27468288
Length
70 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTCTGTGCACCTCAGGAG
3' ss Score
7.01
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
ATGGAGCCAATTTGTGCCATGGGAGTTGCTGCTCGCTTGAGGAGTGAGTGGGACCGAAACGAGGGATTTGGACAGAACCACATGGCCCTGAAATTCTTGGGCCAAGATTTTGAGTCCTTGCGTACTCGCTGCCTTCAGAGTGGACATCTGTTTGAGGATGATATTTTCCCAGCCCAGCAGTCATCCTTAGGATTCAAGGAGCTGGGCCCCAACTCTAGCAAAACCAGAGGTGTGCGCTGGATGAGGCCAACG
Seq A exon
GAGTTCTGCTCTGACCCACACTTTATCGTAGATGGGGCTACACGCACTGACATCTGCCAAGGGGCTCTAG
Seq C2 exon
GTGATTGTTGGCTGCTGGCGGCCATTGCGTGCCTTACACTAAACGAACCCTTGCTGCGACGGGTGGTTCCTCATGGCCAGAGCTTCCATCAGCAATATGCCGGAATATTTCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055338-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=40.5)
A:
PF0064816=Peptidase_C2=FE(15.5=100)
C2:
PF0064816=Peptidase_C2=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTTCAGAGTGGACATC
R:
CGCAGCAAGGGTTCGTTTAGT
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]