DreALTA0000904-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000055338 | CAPN1 (2 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr21:27468483-27471091:-
Coord C1 exon
chr21:27470840-27471091
Coord A exon
NA
Coord C2 exon
chr21:27468483-27468552
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
GTCTTCTCTGTGCACCTCAGGAG
3' ss Score
7.01
Exon sequences
Seq C1 exon
ATGGAGCCAATTTGTGCCATGGGAGTTGCTGCTCGCTTGAGGAGTGAGTGGGACCGAAACGAGGGATTTGGACAGAACCACATGGCCCTGAAATTCTTGGGCCAAGATTTTGAGTCCTTGCGTACTCGCTGCCTTCAGAGTGGACATCTGTTTGAGGATGATATTTTCCCAGCCCAGCAGTCATCCTTAGGATTCAAGGAGCTGGGCCCCAACTCTAGCAAAACCAGAGGTGTGCGCTGGATGAGGCCAACG
Seq A exon
NA
Seq C2 exon
GAGTTCTGCTCTGACCCACACTTTATCGTAGATGGGGCTACACGCACTGACATCTGCCAAGGGGCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055338-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=40.5)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAACTCTAGCAAAACCA
R:
GGCAGATGTCAGTGCGTGTAG
Band lengths:
105-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]