HsaALTA1049975-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000182472 | CAPN12
Description
calpain 12 [Source:HGNC Symbol;Acc:HGNC:13249]
Coordinates
chr19:38743033-38744474:-
Coord C1 exon
chr19:38743929-38744474
Coord A exon
NA
Coord C2 exon
chr19:38743033-38743102
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTAAAG
5' ss Score
1
3' ss Seq
GAATCCCCCACCACCCACAGGAG
3' ss Score
5.17
Exon sequences
Seq C1 exon
CAGCTCTGCCCGCCTTCTCTCCTGCTGCTGGCCAAGCCCATTAAGCTGCTACCTTGGCCACAACTGAAGGCCCCACGCCCTGGGAAGAAAGCTACTGAAGAGGCGTCCCTGCTCCCCAGCACCCCAAACCATCAATTAATATTAACGAGGGAAGGCTCCTCATTGCCTAAAGACCCCACTGGGGCTCCAATGGAAGAGAGGCCCCGCCCCCGTGACTCAGGAGGTTAAAGGGCCTGGTGCCGGCTTGTGAGGCCAGTGTCCAGATGGCATCCAGCAGTGGGAGGGTCACCATCCAGCTCGTGGATGAGGAGGCTGGGGTCGGAGCCGGGCGCCTGCAGCTTTTTCGGGGCCAGAGCTATGAGGCAATTCGGGCAGCCTGCCTGGATTCGGGGATCCTGTTCCGCGACCCTTACTTCCCTGCTGGCCCTGATGCCCTTGGCTATGACCAGCTGGGGCCGGACTCGGAGAAGGCCAAAGGCGTGAAATGGATGAGGCCCCAT
Seq A exon
NA
Seq C2 exon
GAGTTCTGTGCTGAGCCGAAGTTCATCTGTGAAGACATGAGCCGCACAGACGTGTGTCAGGGGAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182472-6-4,6-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.4=43.0)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(21.7=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCGCGACCCTTACTTC
R:
AACTTCGGCTCAGCACAGAAC
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains