HsaEX6094932 @ hg38
Exon Skipping
Gene
ENSG00000182472 | CAPN12
Description
calpain 12 [Source:HGNC Symbol;Acc:HGNC:13249]
Coordinates
chr19:38742410-38752098:-
Coord C1 exon
chr19:38751998-38752098
Coord A exon
chr19:38743033-38743102
Coord C2 exon
chr19:38742410-38742528
Length
70 bp
Sequences
Splice sites
3' ss Seq
GAATCCCCCACCACCCACAGGAG
3' ss Score
5.17
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGGCAGCATCAGTCTTCAGCTGCTAAGCCGAGAAGATCTGGGAAGGAGTCAGTCAGAGAGCCTTGGGCCAGAGTTCCAGGGGCTCTGGGAGTGGCTGCCAG
Seq A exon
GAGTTCTGTGCTGAGCCGAAGTTCATCTGTGAAGACATGAGCCGCACAGACGTGTGTCAGGGGAGCCTGG
Seq C2 exon
GTAACTGCTGGTTCCTTGCAGCTGCCGCCTCCCTTACTCTGTATCCCCGGCTCCTGCGCCGGGTGGTCCCTCCTGGACAGGATTTCCAGCATGGCTACGCAGGCGTCTTCCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182472-'5-5,'5-4,7-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0064816=Peptidase_C2=FE(21.7=100)
C2:
PF0064816=Peptidase_C2=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGAAGATCTGGGAAGGA
R:
AGCCATGCTGGAAATCCTGTC
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains