MmuEX6009502 @ mm10
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:28881422-28882888:+
Coord C1 exon
chr7:28881422-28881960
Coord A exon
chr7:28882551-28882620
Coord C2 exon
chr7:28882770-28882888
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTGGAACCTTAATCTTCCAGGAG
3' ss Score
5.59
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCTAGGCCTGCCCACCTTTTGTGTGCTCCAGGTCATTAAGCTGCTAAACTCGCCACAACTGAGGGCTCCGTGCCCCAGGGAGGAAACCACTGAAGAAGCGTCCCTGCTCCTTCGCACCCCAAACCATCAATTAATATTAACAAGGGAGAATGCTCCTCGATGCCTAAAGACCCCCAACAGGGTACAAATGGAGCAGGAGCCACGCCCCCCATGACTCAGGAGGTTAAAGGGCTTGGGTCCATCTGTGTGCCCAGAGTGTCCGAATGGCGAGTGGCAACAGGAAGGTCACCATCCAGCTGGTGGACGACGGGGCCGGGACTGGAGCTGGGGGCCCACAGCTCTTTAAAGGCCAGAACTACGAAGCCATCCGAAGAGCTTGCCTGGATTCCGGGATCCTGTTTCGTGACCCTTGCTTTCCTGCTGGCCCTGATGCCCTTGGCTATGACAAGCTGGGACCTGACTCAGAGAAGGCCAAAGGGGTGGAATGGAAGAGGCCCCAT
Seq A exon
GAGTTTTGTGCTGAGCCCCAGTTCATCTGTGAAGACATGAGCAGAACAGATGTGTGCCAGGGAAGCTTGG
Seq C2 exon
GAAACTGCTGGCTTCTTGCAGCTGCTGCCTCCCTCACACTCTACCCCAGGCTCCTGTACCGGGTGGTCCCCCCTGGACAAGGTTTCCAAGATGGCTACGCGGGGGTCTTCCATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-'0-11,'0-0,1-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.4=43.0)
A:
PF0064816=Peptidase_C2=FE(7.7=100)
C2:
PF0064816=Peptidase_C2=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCCGGGATCCTGTTTCG
R:
CTGGGGTAGAGTGTGAGGGAG
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types