RnoEX6002451 @ rn6
Exon Skipping
Gene
ENSRNOG00000030160 | Zfp819
Description
zinc finger protein 819 [Source:RGD Symbol;Acc:1309564]
Coordinates
chr1:99532568-99534207:+
Coord C1 exon
chr1:99532568-99532639
Coord A exon
chr1:99533725-99533851
Coord C2 exon
chr1:99534115-99534207
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGTGAGTATGTCGTTACAGAGG
3' ss Score
1.42
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATGGCCGCTGACGTGAATTTCTGTCAGAAGTCCCAGAGACTGGGAACAGAGGAGCAGGATGGGTCATGTGAG
Seq A exon
AGGTTGGTGTCCTTTGAGGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCTGCCCAGAGATGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
Seq C2 exon
GCTATCCCAGGCCAGAGGCCATCCTCCAGATGAAGAACAGAAAGGACACACGACTGGGGCAGGTTGATTTCCTACATCAGAGGTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030160-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCGCTGACGTGAATTTC
R:
TGACCACACCTCTGATGTAGGA
Band lengths:
163-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]