RnoEX6004662 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190165397-190171309:+
Coord C1 exon
chr1:190165397-190165591
Coord A exon
chr1:190169926-190170113
Coord C2 exon
chr1:190171139-190171309
Length
188 bp
Sequences
Splice sites
3' ss Seq
ACAGCAATTATTGTAATTAGGTC
3' ss Score
3.36
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATATACTTTAAGTCTCCACTAATTCTGGCTGTGAAAAATATCTCCCTTGCTATCCAAGAGAGGGAGTGCTTTGGATTACTTGGATTCAATGGAGCAGGTAAAACAACTACCTTTCAAATTTTGACTGGAGAAATTACTCCTACCGCCGGGGATGTGTTCATTGATGGCATTAGCATCACAAAGGATGTCCTAAAG
Seq A exon
GTCAGGTCAAAAATTGGCTATTGTCCTCAATTTGATGCTTTGCTGGAATACCTGACCGGCTGGGAAATAATGGTCATGTATGCAAGAATATGGGGAATCTCAGAGCGTCAGATTCGGCCCTATGTGAACACGTACTTGAATTCCTTGGAACTGGAGCCTCATGCCAACAGTCTCATCAGCACCTACAG
Seq C2 exon
TGAAGGAAACAAACGTAGGCTGAGCACTGCCATTGCCATGATGGGAAAGCCCTCGGTTATCTTCCTGGATGAACCATCAACTGGCATGGACCCAAGAGCTAGGCGCCTTCTCTGGGACGCAGTGATAAAGATTCGTGAAAGTGGAAAGGCCATCATTATAACATCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'31-31,'31-30,32-31=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
PF0000522=ABC_tran=FE(42.8=100)
C2:
PF0000522=ABC_tran=PD(18.6=46.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCCAAGAGAGGGAGTGC
R:
TTGGGTCCATGCCAGTTGATG
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]