DreEX0009928 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12537125-12540441:+
Coord C1 exon
chr3:12537125-12537319
Coord A exon
chr3:12538006-12538193
Coord C2 exon
chr3:12540271-12540441
Length
188 bp
Sequences
Splice sites
3' ss Seq
ATTTTTAAAAATGACTTCAGGTG
3' ss Score
4.89
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGTATTCAGGTGGGCAGTCGCTGTTAGCAGTGGACCGTCTCTCATTGGCCGTTGGGAAGGGCGAGTGCTTTGGTTTGCTGGGATTTAATGGAGCGGGGAAAACTACAACATTCAAAATGCTGACGGGAGATGAAAGCATCACTTCAGGGGACGCGTTCATTGATGGCTACAGCATCCTTACAGATGTCAAAAAG
Seq A exon
GTGCAGCAGAGAATCGGCTACTGCCCCCAGTTCGATGCGGTGCTGGATCACATGACAGGACGGGAAACCCTGAGCATGTACGCCAGACTGAGGGGCATCCCAGAGAAATATGTCACCGCCTGTGTGGAAAACGTCCTGCGTTCGCTGCTGCTCGAACCTCACGCTGACAAACTCGTCCGCAGCTACAG
Seq C2 exon
TGGTGGCAATAAAAGAAAGTTGAGCGCAGGCATGGCTCTGATTGGTGGTCCGCCTGTGATCTTCCTGGATGAACCATCCACTGGCATGGACCCTGTGGCCAGACGGCTGTTGTGGGATGCAATCACGCGCACCAGAGAGTCTGGCAAAGCCATCATTATAACCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'32-33,'32-31,33-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
PF0000522=ABC_tran=FE(42.8=100)
C2:
PF0000522=ABC_tran=PD(18.6=46.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGCAGTGGACCGTCTCT
R:
CATCCAGGAAGATCACAGGCG
Band lengths:
244-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]