RnoEX6046387 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13775599-13778560:+
Coord C1 exon
chr10:13775599-13775793
Coord A exon
chr10:13777839-13778026
Coord C2 exon
chr10:13778390-13778560
Length
188 bp
Sequences
Splice sites
3' ss Seq
CATACCATATTCTAATCTAGGTA
3' ss Score
7.99
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGTATGACCAGCGTGCACCGCTCCTTGCCGTGGACAGGATCTCCCTTGCAGTCCAGAAAGGGGAGTGCTTTGGCCTGTTGGGTTTCAATGGAGCTGGAAAAACTACAACATTCAAAATGCTGACTGGGGAGGAGACGATCACCTCGGGGGATGCCTTTGTTGGTGGTTACAGCATCAGTTCTGATATTGGGAAG
Seq A exon
GTACGGCAGCGGATGGGCTACTGCCCCCAGTTTGATGCACTGCTTGATCACATGACTGGCAGGGAAATGCTGGTCATGTATGCACGGCTCCGAGGCATCCCAGAGCGTCTCATCGATGCCTGTGTGGAGAACACTCTGCGGGGTCTGCTCCTGGAGCCACATGCCAATAAACTGGTCAAGACTTACAG
Seq C2 exon
TGGTGGTAACAAGCGCAAGTTAAGCACTGGCATCGCCCTCATTGGAGAGCCTGCAGTCATCTTCCTGGATGAGCCATCTACTGGCATGGACCCCGTGGCCCGGCGCCTACTCTGGGACACTGTAGCCCGGGCCCGAGAGTCTGGCAAAGCCATTGTCATCACCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'39-46,'39-45,41-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
PF0000522=ABC_tran=FE(42.8=100)
C2:
PF0000522=ABC_tran=PD(18.6=46.6)
Main Skipping Isoform:
ENSRNOT00000079700fB305
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGTTGGGTTTCAATGGA
R:
TACAGTGTCCCAGAGTAGGCG
Band lengths:
247-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]