MmuEX0002982 @ mm9
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24542190-24547116:+
Coord C1 exon
chr17:24542190-24542384
Coord A exon
chr17:24544503-24544690
Coord C2 exon
chr17:24546809-24547116
Length
188 bp
Sequences
Splice sites
3' ss Seq
CACACCATATTCTAACCCAGGTG
3' ss Score
5.4
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGTATGACCAGCGAGCACCGCTCCTTGCCGTGGACAGGATCTCCCTTGCGGTCCAGAAAGGGGAGTGCTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAAAACCACAACATTCAAAATGCTGACTGGGGAGGAGACCATCACCTCAGGGGATGCCTTTGTTGGTGGTTACAGCATCAGTTCTGACATCGGGAAG
Seq A exon
GTGCGGCAGCGGATGGGCTACTGCCCCCAGTTTGATGCACTGCTTGATCACATGACTGGCAGGGAGATGCTGGTTATGTATGCACGGCTCCGAGGCATCCCAGAGCGGCTCATCAATGCCTGTGTGGAGAATACTCTGCGGGGTCTGCTGCTGGAACCGCACGCCAACAAACTAGTCAAGACTTACAG
Seq C2 exon
CTTCATGAAGGGAAGATACTGGCTATGACTAGGTGCTGAGACCATTGGCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCCTAGCTCTGTGCCTTCAAGAAGTCACTGGCCACAGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130_MULTIEX3-1/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
PF0000522=ABC_tran=FE(42.8=100)
C2:
PF0000522=ABC_tran=PD(13.8=69.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCATCACCTCAGGGGATG
R:
GATGTGCTTCAAGTCTGGCCA
Band lengths:
258-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: