MmuINT0007855 @ mm9
Intron Retention
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24542190-24544690:+
Coord C1 exon
chr17:24542190-24542384
Coord A exon
chr17:24542385-24544502
Coord C2 exon
chr17:24544503-24544690
Length
2118 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CACACCATATTCTAACCCAGGTG
3' ss Score
5.4
Exon sequences
Seq C1 exon
GTGTATGACCAGCGAGCACCGCTCCTTGCCGTGGACAGGATCTCCCTTGCGGTCCAGAAAGGGGAGTGCTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAAAACCACAACATTCAAAATGCTGACTGGGGAGGAGACCATCACCTCAGGGGATGCCTTTGTTGGTGGTTACAGCATCAGTTCTGACATCGGGAAG
Seq A exon
GTGGGTGCAGCAGGGATTCCCTACTGGTGTGGGGCAGGCAAGACCAGGGCTACCCTGGAGGCAAGATAGACTTGTCTCTGGCTCACCATAGGCAGAGCAATATCTGTGGACATCAGGACAGAACAGTGACACACTGTAACTGTGTGGTAGACAGGAAAGAAATGCTAGCCAAAGAAACGTAACTCAGCTGCCTCTGTCCTTCCAAGACTGTCCTGTAGCTAAATGTGGACAAAAATAAATAAATATGGATTTGAAGACCTAGAGAGATAAAAGGAGGGAAAGGCTCTCACTCACTGGGCTGAAACCACAGTGGTGGACTAGGCACTGCCCACGTGTTCCCTAATGCCTGAGAAAGTAGAGAGGCTCCTGTGCCAAGCAGAGCTGGAAGAGGAAAGGGAATGAATAAAAGCCTGGCAGTGGGCACCTCCCTGAGCTGGTGGCAGGGAGGGCTAGACTGTGGCATCCCCACATGCCAGAATGCCAGCAAGTCCTCCGGAGACTCGGCTCTGAGACTGGAACACCATGTCCAGGTGTGTAAACACAGAAGCAACCAAGCCAATGCCATCAGCAGAATTTGCAGGCACAGCACTCAAGTAATGAACAAACTCCGATTTTTTTTCTAGATTTTTTTATGTATATGAGTGGTTTTGCCTGTGTGTATATTCTATGCATGCCCGGCCCCATGGAGGTCAGAAGAGGGTGTTGGGCTCCCTGGAATTAGAGATACAGATGATTGTGAGCCACCATGTTGGTGCTGGGGAGCAAACCCAGTTTTCTACAAGGTTGGTGAGGGCACTGAGAACCACCGGACTATTTCTACAGTCCACAGGCTCAAATGTAAGACTTTTAGTGTCTGGCTAAGATTATACAAATAACTTATGTTTAAGGGTTAGAAATTGCTGGACATGGTGACACACAGCTTTAATCCCAGCACTCAGGAGGTAGAGGCAGGTGAATTCAAGGCCAGCGTAGTCTACATAGCAAGTTCAAGATAGCCATAGCAACATAGAGAAACCATCTCAAATAAACAAAAAAGAATTTAAGAAGCATTAGAAATGTATGCATAGGCGATCTTGCAGTGATCCATATCTGCTCTGAAAAGCATGAAGAGACGGAGGTGATACTAAACACACTTAACCTGAGGTCCAGAAGGAGCTGTGGGGGAGCCAAGCCAAAGCTAAGAATTACCCCAAATCAGTTAATAGCAGACTCTAGATCTCCAAGGAGAATTCTCAATCTTTAGAGCCTGGCACACCTGCCCCAAGTAGCTGAAGGTACGGGGCAGATGGTACACAACTCCCACCAGAGTCAGGAGAGGCCTGCTCTGCTGTCCCAGCCTTGCTGCCCATCAAGACTTGCCGAGAGAGACACCTCTGCCATCGGAATGGTAGCCACTATAAGGCTATCAACAATGAACACTTCTTATTAGGAGAAGAAACATAAGCTAGTTGTTAAATGACTGAGGGAGGAGTGTGTGATCACATGTCAGCTGTAAAGTTTTACGTGGGTGACCACTTGTATAATAATGAAACTATTGTCTGGTTTTTATTGGTTTATCTTTACTGGTCGTGTTCTTATTATGGTTGTTTGGTTTTTGGTGGTAGTGGTGGGCTTTTTGTTTAGGTTGGTTTAAGTTTGTTGTTTTGGTTTTTGGTTTTTGAAGACAGGCTTTCTCTATGTATCAGCCCTGACTGTCTTGGAACTCACTTTGTAGACCAGGCTGGCTTTGAACTCACATAGATTCCTGTCTGTCCCTGCCTCCAGAGTGCTGGGATTAAAAGCATGCACCTCCACACCTAATGAAACCATTCTTATTTAGTTAACCTCACAGTTGTCTGTCACAGGCTCCCAGCTTGACCCCTTGCTGGCCCATCTGTCCCTTTGGCAGCCAAGTCCTTCCTGTGTCCCTACTTGGGTATTGCTCAGAGAGCTTCATGAAGCTTTGGTCGGCCACCTGTGCCTAGTTACTCACTCTTTAGACAACTCTGACGTACTCATGGGATGTAGATGGAGAATAGGCATCGAGGACTGCCTCTATAGGCAGGCACCATGGCCAGGGGGGTCCTCTGAGAGATGAGCTCTCTAACCTGTTCCCTCCCACACCATATTCTAACCCAG
Seq C2 exon
GTGCGGCAGCGGATGGGCTACTGCCCCCAGTTTGATGCACTGCTTGATCACATGACTGGCAGGGAGATGCTGGTTATGTATGCACGGCTCCGAGGCATCCCAGAGCGGCTCATCAATGCCTGTGTGGAGAATACTCTGCGGGGTCTGCTGCTGGAACCGCACGCCAACAAACTAGTCAAGACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-Abca3:NM_013855:28
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
NA
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: