GgaINT0016433 @ galGal3
Intron Retention
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14335912-14336876:-
Coord C1 exon
chr14:14336682-14336876
Coord A exon
chr14:14336100-14336681
Coord C2 exon
chr14:14335912-14336099
Length
582 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CAGCTTCCTCTTGCCCCCAGGTG
3' ss Score
10.47
Exon sequences
Seq C1 exon
GTCTATGACAGCCGGGAATCCCTGCTGGCAGTGGACAGGATCTCTTTGGCAGTCAGCAAAGGGGAATGCTTTGGCCTTCTTGGCTTCAATGGAGCGGGCAAAACCACCACGTTCAAGATGCTGACGGGTGATGAGAGCATCACGTCGGGGGATGCCTTTGTGGATGGCCACAGCATTCTGGCCAACATCAAGAAG
Seq A exon
GTACTGAGGGCTGCAGGGGCAGCACATGGTGTCCTCCATCTGCCTGGGCTGGGCTCCTTATGAGTGCCCCCAGGGAGGGCACAGCTGCAGGTGCCAGGGGTGATGCGGTGCACCAGGGATGTGTGTTGTGATCTGGCCCAGCTTTCCCTGTTAATCTGGTCACTTGAAAGCAGTCTGGTGGACTAGCAGATATGAAACAAAGGGAAACCAAACCTTGTGAGGGTGGCAAAGCCTTTGTTAAAATTGTTCAGCACTCCAAATGGATATGTGGAAAATGTGAGCTAGTGCTCACGGTCAGATGGTGGTATCCCTAAAATCAAGTGAGACTTCCAGATCCCTGACAGCTCTTCTTGCTGAAAATTGCCCACTCCCTTTGGCAAGACCAGAGATGAGTCACGAACTGAAACACCCCAAGCATGGATCAGGATTTTGGTTCAATCTCTGTGCATGCATCTCTGTCAGCCCTGGGTAGCCTGTGATATTGAGCCCGTAGCAAAGCTCAGTGGGTGCCGGGGCCTCTCCCCAGAGCTCTCCTTGCAGGCCTGCCGCTGAGCCAACCCCTCAGCTTCCTCTTGCCCCCAG
Seq C2 exon
GTGCAGCAGCGGATCGGCTACTGCCCGCAGTTTGATGCCCTGCTGGACCACATGACAGGCCGTGAGACACTCAGCATGTATGCCCGGCTGCGGGGCATCCCCGAGCGCTACATCGGCAGCTGCGTGGAGAACATGCTGAGGGGGCTGCTCCTGGAGCCCCACGCCGACAAGCTTGTCAGGACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967:ENSGALT00000003054:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
NA
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTGGACAGGATCTCTT
R:
CTGTAGGTCCTGACAAGCTTG
Band lengths:
358-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]