GgaEX6013160 @ galGal3
Exon Skipping
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14335645-14336876:-
Coord C1 exon
chr14:14336682-14336876
Coord A exon
chr14:14335912-14336099
Coord C2 exon
chr14:14335645-14335815
Length
188 bp
Sequences
Splice sites
3' ss Seq
CAGCTTCCTCTTGCCCCCAGGTG
3' ss Score
10.47
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCTATGACAGCCGGGAATCCCTGCTGGCAGTGGACAGGATCTCTTTGGCAGTCAGCAAAGGGGAATGCTTTGGCCTTCTTGGCTTCAATGGAGCGGGCAAAACCACCACGTTCAAGATGCTGACGGGTGATGAGAGCATCACGTCGGGGGATGCCTTTGTGGATGGCCACAGCATTCTGGCCAACATCAAGAAG
Seq A exon
GTGCAGCAGCGGATCGGCTACTGCCCGCAGTTTGATGCCCTGCTGGACCACATGACAGGCCGTGAGACACTCAGCATGTATGCCCGGCTGCGGGGCATCCCCGAGCGCTACATCGGCAGCTGCGTGGAGAACATGCTGAGGGGGCTGCTCCTGGAGCCCCACGCCGACAAGCTTGTCAGGACCTACAG
Seq C2 exon
TGGTGGTAACAAGCGGAAGCTGAGCGCTGGCATCGCCCTCATCGGTGGCCCCCCCGTCATCTTCCTGGATGAGCCCTCCACTGGCATGGACCCCGTGGCCCGGCGTCTGCTCTGGGATGCAGTGACCCGCACGCGGGAGTGTGGCAAATCCATCATCTTCACCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(37.2=83.1)
A:
PF0000522=ABC_tran=FE(42.8=100)
C2:
PF0000522=ABC_tran=PD(18.6=46.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTGGACAGGATCTCTT
R:
GGAGGGCTCATCCAGGAAGAT
Band lengths:
249-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]