RnoEX6004675 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190095474-190100486:+
Coord C1 exon
chr1:190095474-190095591
Coord A exon
chr1:190099542-190099715
Coord C2 exon
chr1:190100308-190100486
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCTTTGCATTTGCAGTCA
3' ss Score
9.38
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
ATTGATCCTGCGCCAATATTCCAATACAATGACCCAATCCTTGTCTTCATCCTTTTGTTATTTTATGCCATCTCCTCGATATTCTTCAGTTTTATGATTAGCACATTGTTTAATAGAG
Seq A exon
TCAGTTTTGCTGTGAGCTTGGGAAGTTTCCTTTTTTTCCTCACCTACTTACCAGCTATTACAATGAATCAAAGCTTTGAGCACATGCCACCCAGGCAGAAGCTGATTTGGTCCTTCGACTTCAATGTTGGGATGGCATTTGGATTTAGATTCCTAGTCAATGCAGAAACAAGGA
Seq C2 exon
AAACTGGAATGAAATGGAATAACATATTCCTACCAACGGATTCAGACAGCCTTTTATTTACCTATGTGCTAGGAATGCTTTTAGTTGATGCTTTCATATATGGCCTTGTGGCCTGGTACATAGAAGCTGTCTTTCCAGGAGAGTACGGTGTGCCAAAGCCGTGGAACTTTTTCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'8-8,'8-7,10-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.8=100)
A:
PF126982=ABC2_membrane_3=FE(13.2=100)
C2:
PF126982=ABC2_membrane_3=PD(8.8=65.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCTGCGCCAATATTCCA
R:
AGCTTCTATGTACCAGGCCACA
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]