MmuEX6013730 @ mm10
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:120341165-120346154:+
Coord C1 exon
chr7:120341165-120341282
Coord A exon
chr7:120345243-120345416
Coord C2 exon
chr7:120345976-120346154
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTTTCTGTTTGCAGTCA
3' ss Score
10.16
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATTGAACCTGCGCCAATCTTCCAATACAATGACCCAACCCTTGTCTTCATCTTTTTGTTATTTTATGCCATCTCCTCGATATTCTTCAGTTTTATGGTTAGCACATTGTTTAATAAAG
Seq A exon
TCAGTTTGGCCATGAGCTTGGGAAGTTTCTTATTTTTCCTCACCTACTTCCCAGCTGTTGCAATGCATCAGAGCTTTGAGCGCATGCCATCCAAGCAGAAGCTGATCTGGTCCTTTGACTTTAATGTTGGGATGGCGTTTGGATTTAGATTCCTAGTCAATACAGACGCAAAGA
Seq C2 exon
AAACTGGAATGAAATGGAGTAACATATTCCTATCCACGGATTCAGACAGCTTTTTATTTGCCTACGTGCTAGGGATGCTTTTAGCTGATGCTTTCATATATGGCCTTGTGGCCTGGTATATAGAAGCTGTCTTTCCAGGAGAGTACGGTGTGCCCAAGCCGTGGAATTTTTTCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'4-14,'4-9,10-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.8=100)
A:
PF126982=ABC2_membrane_3=FE(13.2=100)
C2:
PF126982=ABC2_membrane_3=PD(8.8=65.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCTACCCTCTTAGAGTGT
R:
CAGGGCTATAATGATGGCGAGT
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types