RnoEX6004692 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190223295-190230077:+
Coord C1 exon
chr1:190223295-190223405
Coord A exon
chr1:190224318-190224435
Coord C2 exon
chr1:190229904-190230077
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCGTAATTGTTTGGTTGTAGATC
3' ss Score
6.68
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGTACCAGCTCATAATGGGGCTTAGAAATTGGATCATCTGGATGGGCTATTTCTTCACGTTCTTCCCTTTATATGTCGCCATTATCTTTTTGATATGTATATTACTCTTT
Seq A exon
ATCGTGGAGGAGCCAATCTTGCGCTACAGCGACTGCAGCTTCATCTTCGTCTTCCTTACATGCTATGCCATTGCATCCATATGCTTTGCCTTTATGGTTAGCACGTTCTTCAGTAAAA
Seq C2 exon
CTCGTTTGGCTGCTTCTGCTGGAAACCTCCTATTTTTTGCCAGTTTCTTTCCCTATAACTTCATCTCTGAATACTATGGAATGTTGGACCTTACTACCAAGATAACTGCGTGTCTGAGTGCAAATGTTGCTTTGGCACTGGGGATTAATATCTTAATCAAGTTGGAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783-'7-11,'7-9,9-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.3=100)
A:
PF126982=ABC2_membrane_3=FE(9.0=100)
C2:
PF126982=ABC2_membrane_3=FE(13.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAGCTCATAATGGGGCT
R:
ATTAATCCCCAGTGCCAAAGC
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]