RnoEX6004693 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190212042-190223405:+
Coord C1 exon
chr1:190212042-190212183
Coord A exon
chr1:190221845-190222104
Coord C2 exon
chr1:190223295-190223405
Length
260 bp
Sequences
Splice sites
3' ss Seq
CCATGAGTTTCCTTACACAGGGT
3' ss Score
6.2
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATATGGTGGCCAGACAAGATAGGCTGGAAAACGAGACTTCTCTTTCCAAATCATCCTTCTCTAAAACCCAGGAATCCAAATTATCTTGACGGAGGAAGTCCTG
Seq A exon
GGTACATCAAGGAGGGATTCCTGGCAGTGCAGCATGCCGTGGACAAGAGCATCATGCTGTATCATGAAAGCCGTGCTGGGAAAGAGCTCTTTGAAAACATTGACACTCTGGTACAGAGGTTTCCATACCCAAGTCATCCCCAGGACAAACTACTTTGGATCTCCAGTCCCTTCATCCCACTAATGTTCATACTCATGTTCTCTTCCATCGTTCTTTCCATCATGCGATCCATTGTGTTTGAAAAGGAGAAAAGGTTAAAG
Seq C2 exon
GAGTACCAGCTCATAATGGGGCTTAGAAATTGGATCATCTGGATGGGCTATTTCTTCACGTTCTTCCCTTTATATGTCGCCATTATCTTTTTGATATGTATATTACTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783-'5-8,'5-7,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.9=100)
A:
PF126982=ABC2_membrane_3=FE(19.9=100)
C2:
PF126982=ABC2_membrane_3=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCACTTGCGTTTTGTTGGTGC
R:
ACATATCAAAAAGATAATGGCGACA
Band lengths:
236-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]