RnoEX6005212 @ rn6
Exon Skipping
Gene
ENSRNOG00000020560 | AABR07005821.1
Description
NA
Coordinates
chr1:201662894-201667420:+
Coord C1 exon
chr1:201662894-201662926
Coord A exon
chr1:201666097-201666420
Coord C2 exon
chr1:201667391-201667420
Length
324 bp
Sequences
Splice sites
3' ss Seq
TAACCATCTTGTCTTTCCAGCAA
3' ss Score
8.61
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
ATGTGTCCTATGGACCCGAACAGACCACAGACG
Seq A exon
CAACAGATTCTGGTTTGGCTGTGAGGCTGGTGAATGGAGGAGACAGGTGTCAGGGTCGTGTGGAGATCCTTTACCAGGGTTCCTGGGGTACCGTGTGTGACGACAGCTGGGACACCAAGGATGCCAACGTGGTGTGCAGGCAGCTGGGCTGTGGCTGGGCCTTGTCTGCCCCAGGAAGTGCCCACTTTGGACAAGGCTCTGGATCCATTGTTCTGGATGACGTGGCCTGTACAGGACATGAGGCCTATCTGTGGAGCTGCTCCCACCGAGGCTGGCTCTCTCATAACTGTGGCCACCATGAGGATGCTGGAGTCATCTGTTCAG
Seq C2 exon
ATGCCCAAACCCAGAGCACAACCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020560-'15-18,'15-16,17-18=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.018 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=89.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]